Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G106600.1 | Wheat | nucleus | 83.09 | 86.26 |
| TraesCS2D01G107200.1 | Wheat | nucleus | 85.17 | 85.85 |
| HORVU2Hr1G018380.4 | Barley | nucleus | 78.15 | 76.44 |
| Os07t0677900-01 | Rice | nucleus | 52.47 | 63.39 |
| Zm00001d007164_P001 | Maize | nucleus | 54.86 | 62.09 |
| EER97734 | Sorghum | nucleus | 56.46 | 61.25 |
| GSMUA_Achr8P21300_001 | Banana | nucleus | 31.58 | 46.26 |
| GSMUA_Achr3P09860_001 | Banana | nucleus | 29.98 | 45.08 |
| KRH65464 | Soybean | nucleus | 38.28 | 42.86 |
| KRH76097 | Soybean | nucleus | 37.96 | 42.58 |
| KRH00407 | Soybean | nucleus | 36.04 | 39.51 |
| KRG94824 | Soybean | cytosol | 29.67 | 38.91 |
| PGSC0003DMT400068339 | Potato | nucleus | 34.77 | 38.25 |
| AT3G51720.1 | Thale cress | nucleus | 24.72 | 38.08 |
| Solyc09g042710.2.1 | Tomato | nucleus | 34.61 | 37.87 |
| KRH40785 | Soybean | nucleus | 29.19 | 37.35 |
| CDX78029 | Canola | nucleus | 23.6 | 36.1 |
| CDX73702 | Canola | nucleus | 23.76 | 36.08 |
| Bra036780.1-P | Field mustard | nucleus | 23.45 | 35.85 |
| CDY70507 | Canola | cytosol, nucleus, plastid | 24.56 | 35.57 |
| Bra017122.1-P | Field mustard | nucleus | 28.07 | 34.71 |
| CDY07266 | Canola | cytosol, mitochondrion | 8.93 | 34.57 |
| VIT_13s0067g02400.t01 | Wine grape | nucleus | 29.35 | 34.46 |
| CDY18389 | Canola | nucleus | 27.75 | 34.46 |
| CDY07733 | Canola | cytosol | 18.34 | 34.33 |
| Bra000057.1-P | Field mustard | nucleus | 26.63 | 34.22 |
| AT2G38370.2 | Thale cress | nucleus | 29.03 | 33.77 |
| CDY65893 | Canola | nucleus | 26.48 | 33.47 |
| CDY04348 | Canola | nucleus | 14.67 | 33.33 |
| CDX93176 | Canola | cytosol | 20.41 | 33.16 |
| PGSC0003DMT400074781 | Potato | nucleus | 26.0 | 32.73 |
| TraesCS1B01G309200.1 | Wheat | cytosol | 27.75 | 31.75 |
| Solyc06g050350.2.1 | Tomato | nucleus | 26.0 | 31.41 |
| KRH31225 | Soybean | cytosol | 27.75 | 31.07 |
| CDY24901 | Canola | cytosol | 23.13 | 30.59 |
| CDY19552 | Canola | mitochondrion | 9.73 | 30.5 |
| Bra000190.1-P | Field mustard | nucleus | 22.97 | 30.38 |
| CDY07602 | Canola | nucleus | 22.97 | 30.38 |
| Bra016990.1-P | Field mustard | cytosol | 21.69 | 30.09 |
| CDY06986 | Canola | cytosol | 21.69 | 30.09 |
| KRG97647 | Soybean | plastid | 26.79 | 30.0 |
| CDY58310 | Canola | nucleus | 12.44 | 29.43 |
| CDY11490 | Canola | nucleus | 12.44 | 29.43 |
| VIT_08s0058g01020.t01 | Wine grape | cytosol | 39.23 | 29.25 |
| KRH73215 | Soybean | cytosol | 25.36 | 28.6 |
| CDY70964 | Canola | cytosol | 7.81 | 28.16 |
| KRH14870 | Soybean | nucleus | 26.16 | 27.94 |
| AT3G56270.1 | Thale cress | cytosol | 19.78 | 27.8 |
| AT2G40480.1 | Thale cress | cytosol | 22.65 | 27.41 |
| CDX72151 | Canola | cytosol | 17.54 | 26.07 |
| Bra007760.1-P | Field mustard | nucleus | 12.6 | 24.61 |
| CDY27228 | Canola | cytosol | 17.86 | 23.43 |
| Bra007233.1-P | Field mustard | cytosol | 17.7 | 23.22 |
| Bra039972.1-P | Field mustard | cytosol | 8.29 | 20.8 |
| CDY12396 | Canola | cytosol, endoplasmic reticulum, nucleus | 9.73 | 18.1 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G124200.1 | EnsemblPlantsGene:TraesCS2B01G124200 | InterPro:Web | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF4 |
| PFAM:PF05701 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr2B:-:92797565..92799745
Molecular Weight (calculated)
68860.6 Da
IEP (calculated)
5.021
GRAVY (calculated)
-0.738
Length
627 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEARPPLL PVRVPVNGED LAPPSAGACG VGVGVGGGRA EIDTSAPFES VREAVDRFGG SAAWSSHLVN RIFAHHKKQN QTVCGGTEDE QRANLAEQTA
101: QIEKELGAKE RETLDVLKQL ESAKKIIADL KLKIQKKTGE DTLQPEEEKQ QQQQDSNCSF TELSTAEPEV KRPEGNAEAT EVQTAEPEAK QQPEGNAEVA
201: EMQTTEPEVK QPDGNANAGA DVDMCAGLDE QEHQQQHPNL VLMELEQAKS NLNRTTGDLA AIRASIESLR NDIATEKVLV ERSREKVSSD ATLVSSLKQE
301: LDQTTQKLQT LKDLQRRRED PSDIFFEIKR MTSEIEQLRN AANASKSEAM MLAAEIEQTK ATIGTAEVRC LAAKKMEEAA RAAEALALAE IKALLCSEAS
401: AQDLQDTDGV SLSVEEYNEL ASMAQEADES SRNKIAAAMV HVDEANQSKS ESLTRLEEAK MEVEECKKAL QEALKRVETA NRRKFAVEET LRRCRSETGH
501: KRRSFRGSPK FKTAAHRHRD DSHCMDIIDV SDNSMKPTLS IGQILSMKLM GPDGYDKSVS DDTSTSETSS VSLGQILNRR QAILTYSSDA SANKKFSGKR
601: KKFAFTGLSV FLAKQAKSKK KRGSDEN
101: QIEKELGAKE RETLDVLKQL ESAKKIIADL KLKIQKKTGE DTLQPEEEKQ QQQQDSNCSF TELSTAEPEV KRPEGNAEAT EVQTAEPEAK QQPEGNAEVA
201: EMQTTEPEVK QPDGNANAGA DVDMCAGLDE QEHQQQHPNL VLMELEQAKS NLNRTTGDLA AIRASIESLR NDIATEKVLV ERSREKVSSD ATLVSSLKQE
301: LDQTTQKLQT LKDLQRRRED PSDIFFEIKR MTSEIEQLRN AANASKSEAM MLAAEIEQTK ATIGTAEVRC LAAKKMEEAA RAAEALALAE IKALLCSEAS
401: AQDLQDTDGV SLSVEEYNEL ASMAQEADES SRNKIAAAMV HVDEANQSKS ESLTRLEEAK MEVEECKKAL QEALKRVETA NRRKFAVEET LRRCRSETGH
501: KRRSFRGSPK FKTAAHRHRD DSHCMDIIDV SDNSMKPTLS IGQILSMKLM GPDGYDKSVS DDTSTSETSS VSLGQILNRR QAILTYSSDA SANKKFSGKR
601: KKFAFTGLSV FLAKQAKSKK KRGSDEN
001: MAEFPEPGTV NPDSDLSNGR AEKPEIDTSA PFESVREAAT RFGGFGFWRP SLNKLPDASQ ENIQEPDIMG LKAQAFELQR ELIVKERETL EVLKELEATK
101: ATVLKLQQRN EAYEEDTLRE EVDSHIKPAG VVLKDLSQAK MNLCKIASIR ESVEQLKNKL NEERAALEKT RERLMEKSLK VFSLEEEEVR VRFAKEGQTG
201: EKDLGMLNEV QRLSRQAQEV KKTGENAELE VVKAMAETES TRDKIRTAKI RLVAARKMKE AAREAEAVAI AEIEAVTGSM NVGKAEAVTI SAEEYSVLAR
301: SARDAEEEAR KRVEDAMSRV EEANVSKKDV LKKVDEAAQE IETSKRVLEE AVERVDAANA SKIEAEEALR KWRSENGQRR RLSSSVNNTS KFKSRRETTT
401: RLMDVNGLHL TYDVVDGSSS SSTVPVLKPT MSIGQILSKK LLLAEDSDMN VANERRKMSL GQMLAKNSSS DKTVSKRSEG KENEKRTKTR KRKSFGFAKI
501: SVLLNKESKN KKKKKKIALN LR
101: ATVLKLQQRN EAYEEDTLRE EVDSHIKPAG VVLKDLSQAK MNLCKIASIR ESVEQLKNKL NEERAALEKT RERLMEKSLK VFSLEEEEVR VRFAKEGQTG
201: EKDLGMLNEV QRLSRQAQEV KKTGENAELE VVKAMAETES TRDKIRTAKI RLVAARKMKE AAREAEAVAI AEIEAVTGSM NVGKAEAVTI SAEEYSVLAR
301: SARDAEEEAR KRVEDAMSRV EEANVSKKDV LKKVDEAAQE IETSKRVLEE AVERVDAANA SKIEAEEALR KWRSENGQRR RLSSSVNNTS KFKSRRETTT
401: RLMDVNGLHL TYDVVDGSSS SSTVPVLKPT MSIGQILSKK LLLAEDSDMN VANERRKMSL GQMLAKNSSS DKTVSKRSEG KENEKRTKTR KRKSFGFAKI
501: SVLLNKESKN KKKKKKIALN LR
Arabidopsis Description
Plant protein of unknown function (DUF827) [Source:TAIR;Acc:AT2G38370]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.