Factsheet for HORVU2Hr1G018380.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001280.1
HORVU1Hr1G035960.19
HORVU2Hr1G016740.4
HORVU2Hr1G030940.1
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4
HORVU6Hr1G075950.4
HORVU7Hr1G038420.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56270.1	HORVU2Hr1G030940.1	AT2G04630.1	21798944
AT3G56270.1	HORVU0Hr1G001280.1	AT2G41090.1	17360592
AT3G56270.1	HORVU2Hr1G016740.4	AT2G41090.1	17360592
AT3G56270.1	HORVU3Hr1G038010.1	AT2G41090.1	17360592
AT3G56270.1	HORVU3Hr1G079210.4	AT2G41090.1	17360592
AT3G56270.1	HORVU4Hr1G026290.3	AT2G41090.1	17360592
AT3G56270.1	HORVU5Hr1G014060.1	AT2G41090.1	17360592
AT3G56270.1	HORVU5Hr1G014070.2	AT2G41090.1	17360592
AT3G56270.1	HORVU5Hr1G044710.4	AT2G41090.1	17360592
AT3G56270.1	HORVU0Hr1G001280.1	AT2G41100.1	17360592
AT3G56270.1	HORVU2Hr1G016740.4	AT2G41100.1	17360592
AT3G56270.1	HORVU3Hr1G038010.1	AT2G41100.1	17360592
AT3G56270.1	HORVU3Hr1G079210.4	AT2G41100.1	17360592
AT3G56270.1	HORVU4Hr1G026290.3	AT2G41100.1	17360592
AT3G56270.1	HORVU5Hr1G014060.1	AT2G41100.1	17360592
AT3G56270.1	HORVU5Hr1G014070.2	AT2G41100.1	17360592
AT3G56270.1	HORVU5Hr1G044710.4	AT2G41100.1	17360592
AT3G56270.1	HORVU1Hr1G035960.19	AT3G01180.1	21798944
AT3G56270.1	HORVU6Hr1G075950.4	AT3G01180.1	21798944
AT3G56270.1	HORVU7Hr1G038420.1	AT3G01180.1	21798944
AT3G56270.1	HORVU0Hr1G001280.1	AT5G21274.1	17360592
AT3G56270.1	HORVU2Hr1G016740.4	AT5G21274.1	17360592
AT3G56270.1	HORVU3Hr1G038010.1	AT5G21274.1	17360592
AT3G56270.1	HORVU3Hr1G079210.4	AT5G21274.1	17360592
AT3G56270.1	HORVU4Hr1G026290.3	AT5G21274.1	17360592
AT3G56270.1	HORVU5Hr1G014060.1	AT5G21274.1	17360592
AT3G56270.1	HORVU5Hr1G014070.2	AT5G21274.1	17360592
AT3G56270.1	HORVU5Hr1G044710.4	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G106600.1	Wheat	nucleus	75.97	80.63
TraesCS2B01G124200.1	Wheat	nucleus	76.44	78.15
TraesCS2D01G107200.1	Wheat	nucleus	75.19	77.49
Os07t0677900-01	Rice	nucleus	50.86	62.81
Zm00001d007164_P001	Maize	nucleus	53.98	62.45
EER97734	Sorghum	nucleus	55.85	61.94
GSMUA_Achr8P21300_001	Banana	nucleus	31.05	46.5
GSMUA_Achr3P09860_001	Banana	nucleus	28.86	44.36
KRH65464	Soybean	nucleus	37.6	43.04
KRH76097	Soybean	nucleus	37.29	42.75
KRH00407	Soybean	nucleus	35.57	39.86
KRG94824	Soybean	cytosol	29.64	39.75
PGSC0003DMT400068339	Potato	nucleus	34.79	39.12
Solyc09g042710.2.1	Tomato	nucleus	34.79	38.92
AT3G51720.1	Thale cress	nucleus	24.34	38.33
KRH40785	Soybean	nucleus	28.86	37.76
CDY70507	Canola	cytosol, nucleus, plastid	24.02	35.57
VIT_13s0067g02400.t01	Wine grape	nucleus	29.49	35.39
CDX78029	Canola	nucleus	22.62	35.37
CDX73702	Canola	nucleus	22.78	35.35
CDY18389	Canola	nucleus	27.77	35.25
Bra036780.1-P	Field mustard	nucleus	22.46	35.12
Bra017122.1-P	Field mustard	nucleus	27.46	34.71
CDY07733	Canola	cytosol	17.94	34.33
AT2G38370.2	Thale cress	nucleus	28.86	34.32
CDY07266	Canola	cytosol, mitochondrion	8.58	33.95
CDY65893	Canola	nucleus	26.05	33.67
Bra000057.1-P	Field mustard	nucleus	25.43	33.4
CDX93176	Canola	cytosol	19.97	33.16
PGSC0003DMT400074781	Potato	nucleus	25.27	32.53
CDY04348	Canola	nucleus	13.88	32.25
Solyc06g050350.2.1	Tomato	nucleus	25.74	31.79
CDY24901	Canola	cytosol	23.24	31.43
KRH31225	Soybean	cytosol	27.3	31.25
Bra000190.1-P	Field mustard	nucleus	23.09	31.22
CDY07602	Canola	nucleus	23.09	31.22
KRG97647	Soybean	plastid	26.68	30.54
Bra016990.1-P	Field mustard	cytosol	21.06	29.87
CDY06986	Canola	cytosol	21.06	29.87
CDY19552	Canola	mitochondrion	9.2	29.5
KRH73215	Soybean	cytosol	25.59	29.5
VIT_08s0058g01020.t01	Wine grape	cytosol	38.38	29.25
CDY58310	Canola	nucleus	12.01	29.06
CDY11490	Canola	nucleus	12.01	29.06
AT3G56270.1	Thale cress	cytosol	20.12	28.92
KRH14870	Soybean	nucleus	26.05	28.45
AT2G40480.1	Thale cress	cytosol	22.78	28.19
HORVU1Hr1G070120.3	Barley	nucleus	26.05	27.02
CDY70964	Canola	cytosol	7.33	27.01
CDX72151	Canola	cytosol	17.32	26.3
Bra007760.1-P	Field mustard	nucleus	12.32	24.61
Bra007233.1-P	Field mustard	cytosol	17.78	23.85
CDY27228	Canola	cytosol	17.47	23.43
Bra039972.1-P	Field mustard	cytosol	7.8	20.0
CDY12396	Canola	cytosol, endoplasmic reticulum, nucleus	9.67	18.4

Protein Annotations

EnsemblPlants:HORVU2Hr1G018380.4	EnsemblPlantsGene:HORVU2Hr1G018380	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF4
PFAM:PF05701	SEG:seg	UniParc:UPI000B488B81	UniProt:A0A287H883	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr2H:-:46832298..46834772

Molecular Weight (calculated)

68283.1 Da

IEP (calculated)

5.034

GRAVY (calculated)

-0.668

Length

641 amino acids

Sequence
(BLAST)

001: MEEEARPPLL PVRVPVNGED LAPAAGACGV GGGRAEIDTS APFESVREAV DRFGGSAAWS SHLVNRIFAH HKKQDRSVGA EDAQRVSLAE QTAQIEKELG
101: AKERETLDVL KQLESAKKII AGLKLKIQKK TAEDTLQPEE DKRQTESNCS LTEVSAAEPD VKQPEXXXXX XXXXXXXXXX QPEGNAEAPE EEQTAEVKQP
201: GGNAEAPEEE QTAEVKQPEG NAEAAGVETA GTGVKQRPEG NAGADVDMLD EQQHPNLVLM ELEQAKSNLN RTTGDLAAIR ASIESLRNDI ATEKVLVERS
301: REKVSSDATL VSSLELELDQ TTQKLQTLKD LQRRREDPSD VFFEIKKMTS EIEQLRNAAN ASKSEAMMLA AEIEQTKATI GTAEIRCLAA KKMEEAARAA
401: EALALAEIKA LLCTESSAGD LQGVDGVSLS VEEYSELALK AQEADESSRN KIAAAMVHVD EANQSKSESL TRLEEAKMEV EECKKALQEA LKRVETANRR
501: KFAVEETLRR CRSETGHKRR SFCGSPKFKT AAHRHKHDSH CMDIIDVSDN SMKPTLSIGQ ILSMKLMGPD GYDKSVSDDT SETSSVSLGQ ILNRRQAIVY
601: SSDTSANKKF SGKRKKFAFT GLSVFLAKQA KSKKKRGSDE N

Best Arabidopsis Sequence Match ( AT2G38370.1 )
(BLAST)

001: MAEFPEPGTV NPDSDLSNGR AEKPEIDTSA PFESVREAAT RFGGFGFWRP SLNKLPDASQ ENIQEPDIMG LKAQAFELQR ELIVKERETL EVLKELEATK
101: ATVLKLQQRN EAYEEDTLRE EVDSHIKPAG VVLKDLSQAK MNLCKIASIR ESVEQLKNKL NEERAALEKT RERLMEKSLK VFSLEEEEVR VRFAKEGQTG
201: EKDLGMLNEV QRLSRQAQEV KKTGENAELE VVKAMAETES TRDKIRTAKI RLVAARKMKE AAREAEAVAI AEIEAVTGSM NVGKAEAVTI SAEEYSVLAR
301: SARDAEEEAR KRVEDAMSRV EEANVSKKDV LKKVDEAAQE IETSKRVLEE AVERVDAANA SKIEAEEALR KWRSENGQRR RLSSSVNNTS KFKSRRETTT
401: RLMDVNGLHL TYDVVDGSSS SSTVPVLKPT MSIGQILSKK LLLAEDSDMN VANERRKMSL GQMLAKNSSS DKTVSKRSEG KENEKRTKTR KRKSFGFAKI
501: SVLLNKESKN KKKKKKIALN LR

Arabidopsis Description

Plant protein of unknown function (DUF827) [Source:TAIR;Acc:AT2G38370]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.