CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174
CDY30291
CDY30836
CDY34693
CDY37538
CDY43274
CDY55806

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56270.1	CDY30291	AT2G04630.1	21798944
AT3G56270.1	CDY30836	AT2G04630.1	21798944
AT3G56270.1	CDY34693	AT3G01180.1	21798944
AT3G56270.1	CDY37538	AT3G01180.1	21798944
AT3G56270.1	CDY43274	AT3G01180.1	21798944
AT3G56270.1	CDY55806	AT3G01180.1	21798944
AT3G56270.1	CDX73678	AT3G51920.1	17360592
AT3G56270.1	CDX95314	AT3G51920.1	17360592
AT3G56270.1	CDY23174	AT3G51920.1	17360592
AT3G56270.1	CDY06478	AT4G14640.1	17360592
AT3G56270.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007233.1-P	Field mustard	cytosol	92.47	92.47
CDX72151	Canola	cytosol	74.48	84.36
AT3G56270.1	Thale cress	cytosol	48.95	52.47
CDX93176	Canola	cytosol	35.98	44.56
CDY24901	Canola	cytosol	39.75	40.08
CDY06986	Canola	cytosol	37.45	39.6
CDY07602	Canola	nucleus	37.87	38.19
CDY07266	Canola	cytosol, mitochondrion	10.67	31.48
CDY19552	Canola	mitochondrion	11.09	26.5
KRH31225	Soybean	cytosol	30.33	25.89
CDY04348	Canola	nucleus	14.64	25.36
CDX73702	Canola	nucleus	21.76	25.18
VIT_13s0067g02400.t01	Wine grape	nucleus	28.03	25.09
KRG97647	Soybean	plastid	29.08	24.82
KRH73215	Soybean	cytosol	28.45	24.46
CDX78029	Canola	nucleus	20.92	24.39
KRH14870	Soybean	nucleus	28.03	22.83
GSMUA_Achr8P21300_001	Banana	nucleus	19.67	21.96
CDY70507	Canola	cytosol, nucleus, plastid	19.67	21.71
Os07t0677900-01	Rice	nucleus	23.01	21.19
CDY07733	Canola	cytosol	14.85	21.19
CDY58310	Canola	nucleus	11.72	21.13
CDY11490	Canola	nucleus	11.72	21.13
CDY65893	Canola	nucleus	21.55	20.77
Zm00001d047516_P001	Maize	nucleus	23.64	20.73
Zm00001d007164_P001	Maize	nucleus	23.85	20.58
EER92305	Sorghum	nucleus	23.43	20.55
GSMUA_Achr3P09860_001	Banana	nucleus	17.57	20.14
EER97734	Sorghum	nucleus	24.27	20.07
Os03t0339700-01	Rice	nucleus	22.8	20.04
PGSC0003DMT400074781	Potato	nucleus	20.08	19.28
CDY18389	Canola	nucleus	20.08	19.01
TraesCS2A01G106600.1	Wheat	nucleus	23.64	18.71
Solyc06g050350.2.1	Tomato	nucleus	20.08	18.5
TraesCS2B01G124200.1	Wheat	nucleus	23.43	17.86
TraesCS2D01G107200.1	Wheat	nucleus	23.01	17.68
HORVU2Hr1G018380.4	Barley	nucleus	23.43	17.47
CDY70964	Canola	cytosol	6.28	17.24
GSMUA_Achr8P02810_001	Banana	mitochondrion	18.62	16.79
TraesCS1A01G299400.1	Wheat	cytosol	18.83	16.36
Os05t0476100-01	Rice	cytosol, nucleus, plastid	19.04	16.08
TraesCS1D01G298300.1	Wheat	nucleus	18.62	15.89
TraesCS1B01G309200.1	Wheat	cytosol	18.2	15.88
CDY12396	Canola	cytosol, endoplasmic reticulum, nucleus	10.88	15.43
Zm00001d010610_P001	Maize	cytosol	16.53	14.18
HORVU1Hr1G070120.3	Barley	nucleus	17.99	13.92
OQU78181	Sorghum	nucleus	15.9	5.52

Protein Annotations

EnsemblPlants:CDY27228	EnsemblPlantsGene:GSBRNA2T00037102001	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF13	ProteinID:CDY27228
ProteinID:CDY27228.1	SEG:seg	UniParc:UPI0004EDC687	UniProt:A0A078GRF8	MapMan:35.1	:

Description

BnaA09g35740DBnaA09g35740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRF8]

Coordinates

chrLK032201:-:243531..248125

Molecular Weight (calculated)

54969.0 Da

IEP (calculated)

6.378

GRAVY (calculated)

-0.710

Length

478 amino acids

Sequence
(BLAST)

001: MAERRLQKNP AAEAIPGTPR IRDVRIVSGS EVTGLCSRGS SRVPFKLKDN YDGVGEYDLN KMEEKAAKLE KDLIMKELET LDFLEALGST KKIVKDLKLE
101: LQQQQPMRCM ESPEHLRSEI KEMNHDERCH RTPMRSPDMI FMELKQANMN LGKTMDDLSM IRSYVESLNM NTVEHKEFLG VASLAEELNS LRLKHDDEER
201: FITKNVSVNP QCEQVKMVVE TNDNKQSSTC LKTARMRLVA ARKMEEAARA AEALAIAEMT MLSSAKDQDE FCFPEPPRSP LTLKEQMQED ISIEIMRKLE
301: EANEEVKQSQ QALETALNRV EIANVKQLEA EDAVRQWNIE SWKDQKAIKA KRSMKDDNIP RRSFLSHVSQ HEPLDNLAKP MLKRNVSVGS GLNRKQVPNT
401: DEKHLRRKFR FMHNTVPEQT ELYCHTVDKK GNCNYSFYEF GVDVDISKSN LRLKPYGEGE DLLGMSGIFE IKVEYSYI

Best Arabidopsis Sequence Match ( AT3G56270.1 )
(BLAST)

001: MAERQQSPAA ETIPGTPVIR EVRTGTGSEN FNPENTRRGC LRAEIDISPQ LYGGRGFWVP FNLEDNYDCV GEFDIKRMEE QTVELEKDLI MKELETLDLL
101: EALGSTKRIF EDLKWQLQQQ ALRCKETPQH LRSHSKEMVD EHCHRNPLKS PDLMTMEMKQ AGMNLCKTMD DLALIHSYAE SLNMKTKEEK DVLGVASLAE
201: ELNSLKFKPA GPDQVERFNT ENLPVNPQCE QIKMVVETYD TAFHKQSKTC PRTADMRLVA ARKMEEAARA AEALALAEMT ILSSRRNQDA LCFPKTPCFP
301: LTLKAQMNKE LSTNVSRIEI LRKLEEANEE VKQSKQALEV ALNRVEIASV KQLEAEEAFR QWNIESWKDQ KAVGAKRSMK RESFPQRSFL SHINQHEPLI
401: DLPEPMLKRN VSMGNALNRK DEKQLVTPRR KFRFIQTHQA SIRKTE

Arabidopsis Description

WEB family protein At3g56270 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYL6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.