CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96335
EES01631
EES05532
EES09201
EES16322
KXG19644
KXG37587
KXG37588
KXG38092
OQU78227
OQU91730

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56270.1	EER96335	AT2G04630.1	21798944
AT3G56270.1	KXG38092	AT2G04630.1	21798944
AT3G56270.1	EES01631	AT2G41090.1	17360592
AT3G56270.1	EES09201	AT2G41090.1	17360592
AT3G56270.1	EES16322	AT2G41090.1	17360592
AT3G56270.1	OQU78227	AT2G41090.1	17360592
AT3G56270.1	EES01631	AT2G41100.1	17360592
AT3G56270.1	EES09201	AT2G41100.1	17360592
AT3G56270.1	EES16322	AT2G41100.1	17360592
AT3G56270.1	OQU78227	AT2G41100.1	17360592
AT3G56270.1	EES05532	AT3G01180.1	21798944
AT3G56270.1	KXG19644	AT3G01180.1	21798944
AT3G56270.1	OQU91730	AT3G01180.1	21798944
AT3G56270.1	KXG37587	AT4G14640.1	17360592
AT3G56270.1	KXG37588	AT4G14640.1	17360592
AT3G56270.1	EES01631	AT5G21274.1	17360592
AT3G56270.1	EES09201	AT5G21274.1	17360592
AT3G56270.1	EES16322	AT5G21274.1	17360592
AT3G56270.1	OQU78227	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010610_P001	Maize	cytosol	27.72	68.58
Os05t0476100-01	Rice	cytosol, nucleus, plastid	22.79	55.48
TraesCS1A01G299400.1	Wheat	cytosol	22.06	55.27
TraesCS1B01G309200.1	Wheat	cytosol	21.92	55.11
TraesCS1D01G298300.1	Wheat	nucleus	22.21	54.64
HORVU1Hr1G070120.3	Barley	nucleus	22.21	49.51
CDY70507	Canola	cytosol, nucleus, plastid	9.87	31.41
KRH40785	Soybean	nucleus	10.81	30.41
CDY07266	Canola	cytosol, mitochondrion	3.56	30.25
GSMUA_Achr8P02810_001	Banana	mitochondrion	11.54	30.0
KRH65464	Soybean	nucleus	12.12	29.82
KRH76097	Soybean	nucleus	12.05	29.7
KRG94824	Soybean	cytosol	10.09	29.08
CDY07733	Canola	cytosol	7.04	28.96
PGSC0003DMT400068339	Potato	nucleus	11.68	28.25
KRH00407	Soybean	nucleus	11.47	27.62
Solyc09g042710.2.1	Tomato	nucleus	11.47	27.57
CDY04348	Canola	nucleus	5.52	27.54
EER92305	Sorghum	nucleus	10.81	27.34
CDY18389	Canola	nucleus	10.01	27.33
AT3G51720.1	Thale cress	nucleus	7.98	27.03
Bra017122.1-P	Field mustard	nucleus	9.8	26.63
CDX78029	Canola	nucleus	7.76	26.1
Bra036780.1-P	Field mustard	nucleus	7.62	25.61
CDY65893	Canola	nucleus	9.14	25.4
EER97734	Sorghum	nucleus	10.6	25.26
AT2G38370.2	Thale cress	nucleus	9.87	25.23
CDX73702	Canola	nucleus	7.55	25.18
Bra000057.1-P	Field mustard	nucleus	8.78	24.8
CDY58310	Canola	nucleus	4.57	23.77
CDY11490	Canola	nucleus	4.57	23.77
CDY19552	Canola	mitochondrion	3.41	23.5
VIT_13s0067g02400.t01	Wine grape	nucleus	9.07	23.41
PGSC0003DMT400074781	Potato	nucleus	8.06	22.29
Solyc06g050350.2.1	Tomato	nucleus	8.27	21.97
CDY70964	Canola	cytosol	2.69	21.26
VIT_08s0058g01020.t01	Wine grape	cytosol	12.92	21.17
KRH31225	Soybean	cytosol	8.56	21.07
KRG97647	Soybean	plastid	8.56	21.07
CDY24901	Canola	cytosol	6.97	20.25
CDX93176	Canola	cytosol	5.66	20.21
CDY07602	Canola	nucleus	6.82	19.83
Bra000190.1-P	Field mustard	nucleus	6.82	19.83
CDY06986	Canola	cytosol	6.46	19.69
Bra016990.1-P	Field mustard	cytosol	6.46	19.69
KRH73215	Soybean	cytosol	7.91	19.6
KRH14870	Soybean	nucleus	8.35	19.59
Bra007760.1-P	Field mustard	nucleus	4.43	19.0
AT2G40480.1	Thale cress	cytosol	7.04	18.73
CDX72151	Canola	cytosol	5.59	18.25
AT3G56270.1	Thale cress	cytosol	5.73	17.71
Bra039972.1-P	Field mustard	cytosol	3.12	17.2
Bra007233.1-P	Field mustard	cytosol	5.59	16.11
CDY27228	Canola	cytosol	5.52	15.9
CDY12396	Canola	cytosol, endoplasmic reticulum, nucleus	3.41	13.95

Protein Annotations

MapMan:13.2.1.2.2	Gene3D:2.20.28.10	Gene3D:2.40.50.140	Gene3D:3.30.1640.10	UniProt:A0A1Z5R420	InterPro:AAA+_ATPase
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006270	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0042555	InterPro:IPR001208
InterPro:MCM	InterPro:MCM_CS	InterPro:MCM_N	InterPro:MCM_OB	InterPro:MCM_dom	InterPro:Mcm3
InterPro:NA-bd_OB-fold	EnsemblPlants:OQU78181	ProteinID:OQU78181	ProteinID:OQU78181.1	InterPro:P-loop_NTPase	PFAM:PF00493
PFAM:PF05701	PFAM:PF14551	PFAM:PF17207	PRINTS:PR01657	PRINTS:PR01659	ScanProsite:PS00847
PFscan:PS50051	PANTHER:PTHR11630	PANTHER:PTHR11630:SF92	SMART:SM00350	SMART:SM00382	EnsemblPlantsGene:SORBI_3009G172950
SUPFAM:SSF50249	SUPFAM:SSF52540	UniParc:UPI000B8BAE0A	InterPro:Web	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:52798474..52805246

Molecular Weight (calculated)

153372.0 Da

IEP (calculated)

8.871

GRAVY (calculated)

-0.442

Length

1378 amino acids

Sequence
(BLAST)

0001: MELFVKEKET FKVLKELQET KHVIDALKVQ IEKVTAEDTN AAKGHADTGI VHPLPAVEQK TSSHTEPSIQ STKGTQSPLT TLIKLNQAKA FLNTDTVNML
0101: KSQIEKEKGS LEKTRERLQF NLGKASSLET DLTKTVAQLQ VVKTPQPVLE PSEIWLQMKH LNAEKAKHKK VSEDLRNEIC ELTAAIEHTR SKTKTMQFRI
0201: VMAEKLKEAS QRGESIALAE MKKLSNGWDL NANTSDVTLS VEEHSTFVLK AQEADSAARK KIDAAMQELD QANQCKLELL ERVEEATAAV ETSRKALEEA
0301: QRREESENKA KLAAEETLRK LRSDQIIQNW RPISNSSVKF KNTALAAPRR AAGSGIYDVN GLSLVTTGPN NVKTVSIGQI LSMKLDRELE MTKTTNTRKK
0401: VSLGQILSQK YEMFSPLRID HDCASRKQFQ PRRKRMGFVV YALLLAKQRH RRRKAASCTH VSSMNKVGIF STSYSLFWPH LLLKGQTSVP VCHTAKWFRS
0501: MVRKYIKYLA GEWRVCLELA NCTSLRCAAP MDRGIRCPAS PGARENHVFP PRRAPTPAKT RRLHPHPLPP NPNPPACRSP EPPIPAPRPL PLAAPLALFR
0601: PRAPSPNPQA AMDVNEEAMA AHKRAFLDFL DQDVGKGVYM QAVRDMVQNK RHRLIIGMDD LRNHNLDLAR RVIRSPGEYM QPASDAVSEV ARNLDPKFLK
0701: EGERVMVGFS GPFGFHRVTP RDLMSSFIGT MVCVEGIVTK CSLVRPKVVK SVHFCPVTGD FLSREYRDIT SFVGLPTGSV YPTRDENGNL LVTEYGMCEY
0801: KDHQTLSMQE VPENSAPGQL PRTVDVIVED DLVDCCKPGD RVSIVGVYKA LPGKSKGSVS GVFRTVLIAN NVSLLNKEAN APVYTREDLK RMKEISRRND
0901: TFDVLGNSLA PSIYGHLWIK KAVVLLMLGG VEKNLKNGTH LRGDINMMMV GDPSVAKSQL LRAVMNIAPL AISTTGRGSS GVGLTAAVTS DQETGERRLE
1001: AGAMVLADRG VVCIDEFDKM NDQDRVAIHE VMEQQTVTIA KAGIHASLNA RCSVIAAANP IYGTYDRSLT PTKNIGLPDS LLSRFDLLFI VLDQMDPEID
1101: RQISEHVARM HRYCTDDGGA RSLDKDGCAE EDDGDAIFVK YDRMLHGQDR RRGKKAKQDR LTVKFVKKYI HYAKNLIQPK LTDEASDHIA TSYAELRDGS
1201: ANAKSGGGTL PITARTLETI IRLSTAHAKM KLRHEVLKSD VEAALQVLNF AIYHKELTEM EEREQREMEM KQQADHDAGA TGGTEDGHGS SGNDPMDVDV
1301: GNTSNDQNVP AERIEAFEAI LGQHVLASHV DQMSIDEIEQ TVNRESTAPY TRSQVEFILE RMQDANRIMI RDGVVRII

Best Arabidopsis Sequence Match ( AT5G46280.1 )
(BLAST)

001: MDVPEETRLR HKRDFIQFLD SMYMEEIKAL VHQKRHRLII NISDIHHHFR EVASRILKNP NEYMQSFCDA ATEATRAIDP KYLKEGELVL VGFEGYFVSR
101: VVTPRELLSD FIGSMVCVEG IVTKCSLVRP KVVKSVHFCP STGEFTNRDY RDITSHAGLP TGSVYPTRDD KGNLLVTEYG LCKYKDHQTL SIQEVPENAA
201: PGQLPRSVDV IAEDDLVDSC KPGDRVSVFG IYKALPGKSK GSVNGVFRTI LIANNIALLN KEANAPIYTK QDLDNIKNIA RRDDAFDLLA RSLAPSIYGH
301: AWIKKAVVLL MLGGVEKNLK NGTHLRGDIN MMMVGDPSVA KSQLLRAIMN IAPLAISTTG RGSSGVGLTA AVTSDQETGE RRLEAGAMVL ADKGIVCIDE
401: FDKMNDQDRV AIHEVMEQQT VTIAKAGIHA SLNARCSVVA AANPIYGTYD RSLTPTKNIG LPDSLLSRFD LLFIVLDQMD AGIDSMISEH VLRMHRYKND
501: RGEAGPDGSL PYAREDNAES EMFVKYNQTL HGKKKRGQTH DKTLTIKFLK KYIHYAKHRI TPKLTDEASE RIAEAYADLR NAGSDTKTGG TLPITARTLE
601: TIIRLATAHA KMKLSSEVTK ADAEAALKLM NFAIYHQELT EMDDREQEER QREQAEQERT PSGRRGNQRR NNEDGAENDT ANVDSETADP MEVDEPSVEQ
701: FSGTVSAARI ETFERVFGQH MRTHRLDDIS IADIETVVNN NGVGASRYSA DEIMALLEKL QDDNKVMISD GKVHII

Arabidopsis Description

MCM3DNA replication licensing factor MCM3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.