Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72151 | Canola | cytosol | 52.69 | 55.69 |
| Bra007233.1-P | Field mustard | cytosol | 53.81 | 50.21 |
| CDY27228 | Canola | cytosol | 52.47 | 48.95 |
| AT2G40480.1 | Thale cress | cytosol | 47.09 | 40.54 |
| KRH31225 | Soybean | cytosol | 38.56 | 30.71 |
| KRG97647 | Soybean | plastid | 37.89 | 30.18 |
| VIT_13s0067g02400.t01 | Wine grape | nucleus | 34.08 | 28.46 |
| KRH73215 | Soybean | cytosol | 35.2 | 28.24 |
| KRH14870 | Soybean | nucleus | 34.98 | 26.58 |
| AT3G51720.1 | Thale cress | nucleus | 22.87 | 25.06 |
| Os07t0677900-01 | Rice | nucleus | 28.25 | 24.28 |
| PGSC0003DMT400074781 | Potato | nucleus | 26.68 | 23.9 |
| Solyc06g050350.2.1 | Tomato | nucleus | 26.91 | 23.12 |
| AT2G38370.2 | Thale cress | nucleus | 27.58 | 22.82 |
| Os03t0339700-01 | Rice | nucleus | 27.8 | 22.79 |
| GSMUA_Achr8P21300_001 | Banana | nucleus | 21.52 | 22.43 |
| Zm00001d007164_P001 | Maize | nucleus | 27.8 | 22.38 |
| EER92305 | Sorghum | nucleus | 26.68 | 21.83 |
| EER97734 | Sorghum | nucleus | 28.25 | 21.8 |
| GSMUA_Achr3P09860_001 | Banana | nucleus | 19.96 | 21.34 |
| Zm00001d047516_P001 | Maize | nucleus | 25.78 | 21.1 |
| TraesCS2A01G106600.1 | Wheat | nucleus | 28.48 | 21.03 |
| HORVU2Hr1G018380.4 | Barley | nucleus | 28.92 | 20.12 |
| TraesCS2B01G124200.1 | Wheat | nucleus | 27.8 | 19.78 |
| TraesCS2D01G107200.1 | Wheat | nucleus | 26.68 | 19.13 |
| GSMUA_Achr8P02810_001 | Banana | mitochondrion | 22.2 | 18.68 |
| Os05t0476100-01 | Rice | cytosol, nucleus, plastid | 22.42 | 17.67 |
| TraesCS1B01G309200.1 | Wheat | cytosol | 21.08 | 17.15 |
| TraesCS1A01G299400.1 | Wheat | cytosol | 21.08 | 17.09 |
| TraesCS1D01G298300.1 | Wheat | nucleus | 21.08 | 16.79 |
| Zm00001d010610_P001 | Maize | cytosol | 20.85 | 16.7 |
| HORVU1Hr1G070120.3 | Barley | nucleus | 21.08 | 15.21 |
| OQU78181 | Sorghum | nucleus | 17.71 | 5.73 |
Protein Annotations
| MapMan:35.1 | EntrezGene:824793 | UniProt:A0A178VK87 | ProteinID:AEE79504.1 | ArrayExpress:AT3G56270 | EnsemblPlantsGene:AT3G56270 |
| RefSeq:AT3G56270 | TAIR:AT3G56270 | RefSeq:AT3G56270-TAIR-G | EnsemblPlants:AT3G56270.1 | TAIR:AT3G56270.1 | EMBL:AY086041 |
| Unigene:At.5070 | EMBL:BT004218 | EMBL:BT005056 | ProteinID:CAB87426.1 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0008150 | GO:GO:0009903 |
| GO:GO:0009904 | GO:GO:0009987 | GO:GO:0016043 | RefSeq:NP_191186.1 | ProteinID:OAP06266.1 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF13 | UniProt:Q9LYL6 | UniParc:UPI000000C2EC |
| SEG:seg | : | : | : | : | : |
Description
WEB family protein At3g56270 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYL6]
Coordinates
chr3:+:20870000..20872107
Molecular Weight (calculated)
51242.5 Da
IEP (calculated)
6.985
GRAVY (calculated)
-0.689
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERQQSPAA ETIPGTPVIR EVRTGTGSEN FNPENTRRGC LRAEIDISPQ LYGGRGFWVP FNLEDNYDCV GEFDIKRMEE QTVELEKDLI MKELETLDLL
101: EALGSTKRIF EDLKWQLQQQ ALRCKETPQH LRSHSKEMVD EHCHRNPLKS PDLMTMEMKQ AGMNLCKTMD DLALIHSYAE SLNMKTKEEK DVLGVASLAE
201: ELNSLKFKPA GPDQVERFNT ENLPVNPQCE QIKMVVETYD TAFHKQSKTC PRTADMRLVA ARKMEEAARA AEALALAEMT ILSSRRNQDA LCFPKTPCFP
301: LTLKAQMNKE LSTNVSRIEI LRKLEEANEE VKQSKQALEV ALNRVEIASV KQLEAEEAFR QWNIESWKDQ KAVGAKRSMK RESFPQRSFL SHINQHEPLI
401: DLPEPMLKRN VSMGNALNRK DEKQLVTPRR KFRFIQTHQA SIRKTE
101: EALGSTKRIF EDLKWQLQQQ ALRCKETPQH LRSHSKEMVD EHCHRNPLKS PDLMTMEMKQ AGMNLCKTMD DLALIHSYAE SLNMKTKEEK DVLGVASLAE
201: ELNSLKFKPA GPDQVERFNT ENLPVNPQCE QIKMVVETYD TAFHKQSKTC PRTADMRLVA ARKMEEAARA AEALALAEMT ILSSRRNQDA LCFPKTPCFP
301: LTLKAQMNKE LSTNVSRIEI LRKLEEANEE VKQSKQALEV ALNRVEIASV KQLEAEEAFR QWNIESWKDQ KAVGAKRSMK RESFPQRSFL SHINQHEPLI
401: DLPEPMLKRN VSMGNALNRK DEKQLVTPRR KFRFIQTHQA SIRKTE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.