CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG91449
KRG94975
KRH18664
KRH31638
KRH35367
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56270.1	KRG91449	AT2G04630.1	21798944
AT3G56270.1	KRH35367	AT2G04630.1	21798944
AT3G56270.1	KRG89812	AT2G41090.1	17360592
AT3G56270.1	KRG94975	AT2G41090.1	17360592
AT3G56270.1	KRH18664	AT2G41090.1	17360592
AT3G56270.1	KRG89812	AT2G41100.1	17360592
AT3G56270.1	KRG94975	AT2G41100.1	17360592
AT3G56270.1	KRH18664	AT2G41100.1	17360592
AT3G56270.1	KRH31638	AT4G14640.1	17360592
AT3G56270.1	KRH69070	AT4G14640.1	17360592
AT3G56270.1	KRG89812	AT5G21274.1	17360592
AT3G56270.1	KRG94975	AT5G21274.1	17360592
AT3G56270.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31225	Soybean	cytosol	82.86	82.86
KRH73215	Soybean	cytosol	57.14	57.55
KRH14870	Soybean	nucleus	57.68	55.03
CDX93176	Canola	cytosol	31.61	45.85
CDY06986	Canola	cytosol	35.18	43.58
Bra016990.1-P	Field mustard	cytosol	35.0	43.36
CDY24901	Canola	cytosol	36.07	42.62
Bra000190.1-P	Field mustard	nucleus	35.89	42.41
CDY07602	Canola	nucleus	35.89	42.41
AT2G40480.1	Thale cress	cytosol	39.11	42.28
VIT_13s0067g02400.t01	Wine grape	nucleus	37.14	38.95
AT3G56270.1	Thale cress	cytosol	30.18	37.89
KRH65464	Soybean	nucleus	36.96	36.96
KRH76097	Soybean	nucleus	36.79	36.85
GSMUA_Achr8P21300_001	Banana	nucleus	27.68	36.22
KRG94824	Soybean	cytosol	30.54	35.77
PGSC0003DMT400074781	Potato	nucleus	31.25	35.14
KRH00407	Soybean	nucleus	35.89	35.14
Solyc06g050350.2.1	Tomato	nucleus	31.79	34.3
GSMUA_Achr3P09860_001	Banana	nucleus	25.54	34.29
KRH40785	Soybean	nucleus	29.29	33.47
CDX72151	Canola	cytosol	25.18	33.41
Os03t0339700-01	Rice	nucleus	31.43	32.35
EER92305	Sorghum	nucleus	29.46	30.28
Os07t0677900-01	Rice	nucleus	28.04	30.25
Bra007233.1-P	Field mustard	cytosol	25.54	29.92
GSMUA_Achr8P02810_001	Banana	mitochondrion	28.21	29.81
CDY27228	Canola	cytosol	24.82	29.08
Zm00001d007164_P001	Maize	nucleus	28.57	28.88
Zm00001d047516_P001	Maize	nucleus	28.04	28.81
EER97734	Sorghum	nucleus	29.46	28.55
TraesCS2A01G106600.1	Wheat	nucleus	30.18	27.98
TraesCS2B01G124200.1	Wheat	nucleus	30.0	26.79
HORVU2Hr1G018380.4	Barley	nucleus	30.54	26.68
TraesCS2D01G107200.1	Wheat	nucleus	29.46	26.53
Zm00001d010610_P001	Maize	cytosol	24.64	24.78
Os05t0476100-01	Rice	cytosol, nucleus, plastid	24.64	24.38
TraesCS1B01G309200.1	Wheat	cytosol	23.75	24.27
TraesCS1A01G299400.1	Wheat	cytosol	23.75	24.18
TraesCS1D01G298300.1	Wheat	nucleus	23.57	23.57
HORVU1Hr1G070120.3	Barley	nucleus	24.64	22.33
OQU78181	Sorghum	nucleus	21.07	8.56

Protein Annotations

EntrezGene:100776514	MapMan:35.1	EMBL:ACUP02010803	ncoils:Coil	EnsemblPlantsGene:GLYMA_18G021300	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0009903
GO:GO:0009904	GO:GO:0009987	GO:GO:0016043	UniProt:K7MPG6	EnsemblPlants:KRG97647	ProteinID:KRG97647
ProteinID:KRG97647.1	PFAM:PF05701	PANTHER:PTHR32054	PANTHER:PTHR32054:SF13	UniParc:UPI00023DA42B	InterPro:Web
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:1562447..1565729

Molecular Weight (calculated)

62597.6 Da

IEP (calculated)

7.870

GRAVY (calculated)

-0.693

Length

560 amino acids

Sequence
(BLAST)

001: MAESRDAAAA AADGVPGTPA IREVRPESGT HAGIGSGGIR RVNFRAEIDT SPPFGSVKEA VTRFGGSGPW IPYFNNIENF DLKKVEEQAA ELEKDLIVKE
101: LETLDVLEEL GATKRIVEDL KQQLQKEAMK CLATRDVNSY EEAGTPVIKE KDEENCGNIV NDEEQVMQIP SPCSMSSSPD MILMELKKAK LNLGKTINEL
201: GVIQSSIESL NKKMKKEKNF LERTREKLAS KFAAESAQER VQEQTRLNPP APHVEFTFGN PANNFNSDSG QCNGMAETRR PEPSKPLSVY EEYGFSVKTA
301: EIRWLAAKKM EEAARAAEAI ALAEIKALSN AQRSLGFVLP EPEKVTFAFG ERSPLNPKAQ IPKESTLKKV IDSKFQIDET KISKLTILKK LEEAAEEVLH
401: SKQVLTDALN RIETANRKQH AAKEALRRWI PEDDMKEYST INCNKFNQTG IYQDSLQDVT RSTTANNDPK PALRPTISMR DVLSRKQVPE GYATRKEMEE
501: HTERQKVALS QMLQALREDL TLPPKTEKDG NNQKPYVAQR KKFGFIQISL PLAKPNKKRG

Best Arabidopsis Sequence Match ( AT2G40480.1 )
(BLAST)

001: MALAEEQHQN YHVAEAIPGT PGIHDVRIQP GSENSGFCVD PVGVSNVPGI RRVGLRAEID TSPPFGSVQE AVTRFGGRGY WVPFKLDDTF NGEFDIKRME
101: EHAAELEKDL IVKELETLDV LEALGSTKRI VEDLKRQLQQ EALRCSDQLS SDIKEMNDEH CHHNPMSSPD LILMELKQAK MNLGKTMDNL VVIQSSVESL
201: NKKMKEEKDF LEKTRAKLTY GFGGPVSLAE ELSRIKVKPQ VQDEPLREQV KMVAEADETG LNLQNKNSLR TAEMRLVAAR KMEEAAKAAE ALAIAEITML
301: SSNGESQDDD SEFCFPEPPR SPVTPRGLRI DNDFSTDKSS RRGILKKLEE ATEGVKQSKQ ALEAALNRVE IANVKQLAAE NAFRGWTKDS LKGDNFTPLN
401: HTRRSFFSHL NKHHEPLDIL PKPVLKSNIS MRDVLRRKQV PKEDVVAPQR QSLEGQIPRR NVNLSQMLKE LKQDVKFSAR GEKEEVHEEK QYVTQRRKFG
501: FIHITLPLQK QSKKKSSL

Arabidopsis Description

WEB family protein At2g40480 [Source:UniProtKB/Swiss-Prot;Acc:Q5XVC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.