CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000190.1-P	Field mustard	nucleus	100.0	100.0
CDY24901	Canola	cytosol	84.18	84.18
CDX93176	Canola	cytosol	54.43	66.84
CDY06986	Canola	cytosol	62.45	65.49
AT2G40480.1	Thale cress	cytosol	66.88	61.2
CDX72151	Canola	cytosol	38.19	42.89
CDY27228	Canola	cytosol	38.19	37.87
KRH31225	Soybean	cytosol	43.04	36.43
KRH73215	Soybean	cytosol	42.19	35.97
KRG97647	Soybean	plastid	42.41	35.89
VIT_13s0067g02400.t01	Wine grape	nucleus	40.3	35.77
CDY19552	Canola	mitochondrion	14.35	34.0
KRH14870	Soybean	nucleus	41.56	33.56
CDX78029	Canola	nucleus	28.27	32.68
CDX73702	Canola	nucleus	27.85	31.96
CDY07266	Canola	cytosol, mitochondrion	10.55	30.86
GSMUA_Achr3P09860_001	Banana	nucleus	25.95	29.5
CDY04348	Canola	nucleus	17.09	29.35
PGSC0003DMT400074781	Potato	nucleus	30.17	28.71
GSMUA_Achr8P21300_001	Banana	nucleus	25.74	28.5
CDY07733	Canola	cytosol	19.83	28.06
CDY65893	Canola	nucleus	29.32	28.02
Solyc06g050350.2.1	Tomato	nucleus	30.38	27.75
CDY70507	Canola	cytosol, nucleus, plastid	24.47	26.79
CDY18389	Canola	nucleus	28.06	26.34
Os03t0339700-01	Rice	nucleus	30.17	26.29
Os07t0677900-01	Rice	nucleus	28.69	26.2
EER92305	Sorghum	nucleus	29.54	25.69
Zm00001d007164_P001	Maize	nucleus	29.32	25.09
EER97734	Sorghum	nucleus	30.38	24.91
Zm00001d047516_P001	Maize	nucleus	28.06	24.4
GSMUA_Achr8P02810_001	Banana	mitochondrion	27.22	24.34
TraesCS2A01G106600.1	Wheat	nucleus	31.01	24.34
HORVU2Hr1G018380.4	Barley	nucleus	31.22	23.09
TraesCS2B01G124200.1	Wheat	nucleus	30.38	22.97
CDY58310	Canola	nucleus	12.66	22.64
CDY11490	Canola	nucleus	12.66	22.64
TraesCS2D01G107200.1	Wheat	nucleus	29.32	22.35
Os05t0476100-01	Rice	cytosol, nucleus, plastid	26.16	21.91
TraesCS1B01G309200.1	Wheat	cytosol	24.68	21.35
TraesCS1A01G299400.1	Wheat	cytosol	24.05	20.73
TraesCS1D01G298300.1	Wheat	nucleus	24.47	20.71
Zm00001d010610_P001	Maize	cytosol	23.0	19.57
HORVU1Hr1G070120.3	Barley	nucleus	24.89	19.09
CDY70964	Canola	cytosol	6.54	17.82
CDY12396	Canola	cytosol, endoplasmic reticulum, nucleus	12.24	17.21
OQU78181	Sorghum	nucleus	19.83	6.82

Protein Annotations

EnsemblPlants:CDY07602	EnsemblPlantsGene:GSBRNA2T00124698001	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF13
PFAM:PF05701	ProteinID:CDY07602	ProteinID:CDY07602.1	SEG:seg	UniParc:UPI00025402D5	UniProt:A0A078F3G0
MapMan:35.1	:	:	:	:	:

Description

BnaA03g19090DBnaA03g19090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F3G0]

Coordinates

chrLK031980:-:16007..17941

Molecular Weight (calculated)

53893.2 Da

IEP (calculated)

9.303

GRAVY (calculated)

-0.742

Length

474 amino acids

Sequence
(BLAST)

001: MSEEEHQSCV HDVNIRTKSE NFDPAGVSHA PGIRKVSSRA EIDTSPPFGS VQEAVTWFGG RGHWVPFKLQ DNYNCVGEFN IKKMEEHAAE LEKNLIVKEL
101: ETLDVLEALG STKRIVEDLK RQLHQESLRS AEYLSSDIKE MNNEHCNHNP TSSPDLILME LKQAKINLSK TMDDLAMIQS SVESLNKKMK EEKEFLDKTR
201: EKLTYGFGGA VSLAEELSRV RVKPDATPRE HVKMIAETGL NQQNKNCLRT AEMRLVAARK MEEAARAAEA LAIAEIAMLS SSQSNDESEF WFPEPPSSPL
301: TPRGLRNVTD SLRSGVLKKL EEAAQGVKQS KQDLEAALNR VEIANVKQLA AENAFRGWTK HTPTSQTRRS FFRHLNKQNE PVLKSNVSMR DVLRRKQVPK
401: EEAVVSERQS IEGQRRNVNL SQMLRELKHD IKSSVRGEKE EVREEKQFVT QRRKFGFIHI TLPMQKQSKK KTSV

Best Arabidopsis Sequence Match ( AT2G40480.1 )
(BLAST)

001: MALAEEQHQN YHVAEAIPGT PGIHDVRIQP GSENSGFCVD PVGVSNVPGI RRVGLRAEID TSPPFGSVQE AVTRFGGRGY WVPFKLDDTF NGEFDIKRME
101: EHAAELEKDL IVKELETLDV LEALGSTKRI VEDLKRQLQQ EALRCSDQLS SDIKEMNDEH CHHNPMSSPD LILMELKQAK MNLGKTMDNL VVIQSSVESL
201: NKKMKEEKDF LEKTRAKLTY GFGGPVSLAE ELSRIKVKPQ VQDEPLREQV KMVAEADETG LNLQNKNSLR TAEMRLVAAR KMEEAAKAAE ALAIAEITML
301: SSNGESQDDD SEFCFPEPPR SPVTPRGLRI DNDFSTDKSS RRGILKKLEE ATEGVKQSKQ ALEAALNRVE IANVKQLAAE NAFRGWTKDS LKGDNFTPLN
401: HTRRSFFSHL NKHHEPLDIL PKPVLKSNIS MRDVLRRKQV PKEDVVAPQR QSLEGQIPRR NVNLSQMLKE LKQDVKFSAR GEKEEVHEEK QYVTQRRKFG
501: FIHITLPLQK QSKKKSSL

Arabidopsis Description

WEB family protein At2g40480 [Source:UniProtKB/Swiss-Prot;Acc:Q5XVC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.