CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG91449
KRG94975
KRH18664
KRH31638
KRH35367
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56270.1	KRG91449	AT2G04630.1	21798944
AT3G56270.1	KRH35367	AT2G04630.1	21798944
AT3G56270.1	KRG89812	AT2G41090.1	17360592
AT3G56270.1	KRG94975	AT2G41090.1	17360592
AT3G56270.1	KRH18664	AT2G41090.1	17360592
AT3G56270.1	KRG89812	AT2G41100.1	17360592
AT3G56270.1	KRG94975	AT2G41100.1	17360592
AT3G56270.1	KRH18664	AT2G41100.1	17360592
AT3G56270.1	KRH31638	AT4G14640.1	17360592
AT3G56270.1	KRH69070	AT4G14640.1	17360592
AT3G56270.1	KRG89812	AT5G21274.1	17360592
AT3G56270.1	KRG94975	AT5G21274.1	17360592
AT3G56270.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14870	Soybean	nucleus	83.09	78.71
KRH31225	Soybean	cytosol	59.35	58.93
KRG97647	Soybean	plastid	57.55	57.14
CDX93176	Canola	cytosol	32.01	46.11
CDY06986	Canola	cytosol	35.97	44.25
Bra016990.1-P	Field mustard	cytosol	35.79	44.03
CDY24901	Canola	cytosol	36.69	43.04
Bra000190.1-P	Field mustard	nucleus	35.97	42.19
CDY07602	Canola	nucleus	35.97	42.19
AT2G40480.1	Thale cress	cytosol	38.13	40.93
VIT_13s0067g02400.t01	Wine grape	nucleus	33.99	35.39
AT3G56270.1	Thale cress	cytosol	28.24	35.2
KRH65464	Soybean	nucleus	34.71	34.46
KRH76097	Soybean	nucleus	33.81	33.63
GSMUA_Achr8P21300_001	Banana	nucleus	25.72	33.41
GSMUA_Achr3P09860_001	Banana	nucleus	24.1	32.13
PGSC0003DMT400074781	Potato	nucleus	28.6	31.93
Solyc06g050350.2.1	Tomato	nucleus	29.68	31.79
CDX72151	Canola	cytosol	24.1	31.75
KRG94824	Soybean	cytosol	26.62	30.96
KRH00407	Soybean	nucleus	31.3	30.42
Os03t0339700-01	Rice	nucleus	29.68	30.33
GSMUA_Achr8P02810_001	Banana	mitochondrion	28.06	29.43
Bra007233.1-P	Field mustard	cytosol	24.82	28.87
EER92305	Sorghum	nucleus	28.24	28.81
CDY27228	Canola	cytosol	24.46	28.45
KRH40785	Soybean	nucleus	24.82	28.16
Os07t0677900-01	Rice	nucleus	26.26	28.13
EER97734	Sorghum	nucleus	28.24	27.16
Zm00001d047516_P001	Maize	nucleus	26.44	26.97
Zm00001d007164_P001	Maize	nucleus	26.8	26.9
TraesCS2A01G106600.1	Wheat	nucleus	28.42	26.16
HORVU2Hr1G018380.4	Barley	nucleus	29.5	25.59
TraesCS2B01G124200.1	Wheat	nucleus	28.6	25.36
TraesCS2D01G107200.1	Wheat	nucleus	27.7	24.76
Zm00001d010610_P001	Maize	cytosol	23.38	23.34
TraesCS1B01G309200.1	Wheat	cytosol	22.3	22.63
TraesCS1A01G299400.1	Wheat	cytosol	22.3	22.55
Os05t0476100-01	Rice	cytosol, nucleus, plastid	22.66	22.26
TraesCS1D01G298300.1	Wheat	nucleus	22.3	22.14
HORVU1Hr1G070120.3	Barley	nucleus	22.84	20.55
OQU78181	Sorghum	nucleus	19.6	7.91

Protein Annotations

EntrezGene:100781281	MapMan:35.1	EMBL:ACUP02001272	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G259100	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0009903
GO:GO:0009904	GO:GO:0009987	GO:GO:0016043	UniProt:K7KAT6	EnsemblPlants:KRH73215	ProteinID:KRH73215
ProteinID:KRH73215.1	PFAM:PF05701	PANTHER:PTHR32054	PANTHER:PTHR32054:SF13	UniParc:UPI0002337B42	InterPro:Web
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:44623147..44626024

Molecular Weight (calculated)

61790.1 Da

IEP (calculated)

6.778

GRAVY (calculated)

-0.503

Length

556 amino acids

Sequence
(BLAST)

001: MAESSPPATP ELKPELGIGS GSGRKPGIRR VGLRAEIDTS PPFGSVKEAV TRFETTGPWI PFYNFGEAYN SAEDFDIKRV EEEAAKLEKD LIVKELETLD
101: VLEELGATKA ILEELKKQLQ SEALNCFATP GGNSCEQIGV PVKNCVNDIN NEEQALQCRS PWATLSPDLF MMELRQAKMS LGKTISDLRA IQSSVEALNK
201: KMKKDRLFVE RTREKLASKF AAVSAQEVAR KEARLTPPEA TVGTSCTCHH LLNVGRSFKF DTGQSNGMSE TRISEVSRPL PEFGENGFSI KTAEMRWFAA
301: KKMEEAAIAA EAVALAEIEA LCSPEISSEF APPECQKMPF AIGECSPLHP IVQIPQESTL KKVIDSKFQV DKIGSSKLTI LKKLEEATEE VIRSKQVLTE
401: ALNSVESANR KQHAAEEALR RWIPQDDLIG QPVDNYVKPK KFDQSGNCHD CPLPDVTRSI TMNNDPKPIL MSSVSMRDVL SKKQVPEEYT TTKEMEEHSE
501: RKVALSQMLR ALRQDQTLPT IPEKDGSNQR QFIAQRKKIG FIQISLPLGK RSKKKA

Best Arabidopsis Sequence Match ( AT2G40480.1 )
(BLAST)

001: MALAEEQHQN YHVAEAIPGT PGIHDVRIQP GSENSGFCVD PVGVSNVPGI RRVGLRAEID TSPPFGSVQE AVTRFGGRGY WVPFKLDDTF NGEFDIKRME
101: EHAAELEKDL IVKELETLDV LEALGSTKRI VEDLKRQLQQ EALRCSDQLS SDIKEMNDEH CHHNPMSSPD LILMELKQAK MNLGKTMDNL VVIQSSVESL
201: NKKMKEEKDF LEKTRAKLTY GFGGPVSLAE ELSRIKVKPQ VQDEPLREQV KMVAEADETG LNLQNKNSLR TAEMRLVAAR KMEEAAKAAE ALAIAEITML
301: SSNGESQDDD SEFCFPEPPR SPVTPRGLRI DNDFSTDKSS RRGILKKLEE ATEGVKQSKQ ALEAALNRVE IANVKQLAAE NAFRGWTKDS LKGDNFTPLN
401: HTRRSFFSHL NKHHEPLDIL PKPVLKSNIS MRDVLRRKQV PKEDVVAPQR QSLEGQIPRR NVNLSQMLKE LKQDVKFSAR GEKEEVHEEK QYVTQRRKFG
501: FIHITLPLQK QSKKKSSL

Arabidopsis Description

WEB family protein At2g40480 [Source:UniProtKB/Swiss-Prot;Acc:Q5XVC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.