Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g050350.2.1 | Tomato | nucleus | 90.16 | 86.51 |
| VIT_13s0067g02400.t01 | Wine grape | nucleus | 37.55 | 35.02 |
| GSMUA_Achr8P21300_001 | Banana | nucleus | 29.32 | 34.11 |
| PGSC0003DMT400068339 | Potato | nucleus | 37.95 | 33.16 |
| KRH31225 | Soybean | cytosol | 36.95 | 32.86 |
| GSMUA_Achr3P09860_001 | Banana | nucleus | 27.51 | 32.85 |
| CDX93176 | Canola | cytosol | 25.1 | 32.38 |
| Bra016990.1-P | Field mustard | cytosol | 28.71 | 31.64 |
| CDY06986 | Canola | cytosol | 28.71 | 31.64 |
| KRG97647 | Soybean | plastid | 35.14 | 31.25 |
| CDY24901 | Canola | cytosol | 29.32 | 30.8 |
| CDY07602 | Canola | nucleus | 28.71 | 30.17 |
| Bra000190.1-P | Field mustard | nucleus | 28.71 | 30.17 |
| Os03t0339700-01 | Rice | nucleus | 32.73 | 29.96 |
| Os07t0677900-01 | Rice | nucleus | 30.92 | 29.67 |
| KRH73215 | Soybean | cytosol | 31.93 | 28.6 |
| AT2G40480.1 | Thale cress | cytosol | 29.52 | 28.38 |
| EER92305 | Sorghum | nucleus | 30.72 | 28.07 |
| KRH14870 | Soybean | nucleus | 32.53 | 27.6 |
| EER97734 | Sorghum | nucleus | 31.93 | 27.51 |
| GSMUA_Achr8P02810_001 | Banana | mitochondrion | 29.12 | 27.36 |
| Zm00001d007164_P001 | Maize | nucleus | 30.32 | 27.26 |
| TraesCS2A01G106600.1 | Wheat | nucleus | 32.73 | 26.99 |
| Zm00001d047516_P001 | Maize | nucleus | 29.52 | 26.97 |
| AT3G56270.1 | Thale cress | cytosol | 23.9 | 26.68 |
| TraesCS2B01G124200.1 | Wheat | nucleus | 32.73 | 26.0 |
| HORVU2Hr1G018380.4 | Barley | nucleus | 32.53 | 25.27 |
| TraesCS2D01G107200.1 | Wheat | nucleus | 31.53 | 25.24 |
| Os05t0476100-01 | Rice | cytosol, nucleus, plastid | 28.11 | 24.73 |
| CDX72151 | Canola | cytosol | 20.88 | 24.64 |
| TraesCS1B01G309200.1 | Wheat | cytosol | 26.71 | 24.27 |
| TraesCS1A01G299400.1 | Wheat | cytosol | 26.71 | 24.18 |
| TraesCS1D01G298300.1 | Wheat | nucleus | 26.91 | 23.93 |
| Zm00001d010610_P001 | Maize | cytosol | 26.31 | 23.52 |
| HORVU1Hr1G070120.3 | Barley | nucleus | 26.31 | 21.2 |
| Bra007233.1-P | Field mustard | cytosol | 19.48 | 20.29 |
| CDY27228 | Canola | cytosol | 19.28 | 20.08 |
| OQU78181 | Sorghum | nucleus | 22.29 | 8.06 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400074781 | EnsemblPlantsGene:PGSC0003DMG400029079 | InterPro:Web | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF4 |
| PFAM:PF05701 | PGSC:PGSC0003DMG400029079 | SEG:seg | UniParc:UPI0002951A8C | UniProt:M1CU59 | MapMan:35.1 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400029079]
Coordinates
chr6:+:31629774..31632211
Molecular Weight (calculated)
56586.5 Da
IEP (calculated)
7.913
GRAVY (calculated)
-0.718
Length
498 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPRVEIDTS PPFESVKEAV DHFGGSGPWI PQHLLRLPPP DNDSDVGKME EQAVKFEKDL IVKEQEALNV LREVEEAKRF VEGLKVNLMQ QVSELVSSPS
101: LHPESQIPNL NDLSAENLSL CPLQSPGHVL MELNRAKLDL NKMSTDLTVI RSSVETLNKK MKKEKVILDR SSQMKSLNSA AGFSIEENNT MNKELQQLSF
201: EAEQFKKMAE ASRYEVMKAM SEIERTKASI RMAEMRLHAA KKMEEAAKAV EAIAFAERKA LLNGKNSSAV VQHTTEGITI SYEEYYALAR KAQQAEELCK
301: TKFVDTNTMH RTNEANQSEV SITKKMEETT KEIRHNRSSL EEALDNEDGF YRERSEHTQL HYSGHNTSVK SKFRNPQSSL TSHGNPRLVD DNEADNVNDK
401: SVPVFRSSIS IGDILSRKLI LRDDHIVVGK HMESHTERKH VSFSQMLREQ SGIILNPTKA MKEGDVHKQF ITHKKKFGFI QVPLPRQNKK KTQPLNMR
101: LHPESQIPNL NDLSAENLSL CPLQSPGHVL MELNRAKLDL NKMSTDLTVI RSSVETLNKK MKKEKVILDR SSQMKSLNSA AGFSIEENNT MNKELQQLSF
201: EAEQFKKMAE ASRYEVMKAM SEIERTKASI RMAEMRLHAA KKMEEAAKAV EAIAFAERKA LLNGKNSSAV VQHTTEGITI SYEEYYALAR KAQQAEELCK
301: TKFVDTNTMH RTNEANQSEV SITKKMEETT KEIRHNRSSL EEALDNEDGF YRERSEHTQL HYSGHNTSVK SKFRNPQSSL TSHGNPRLVD DNEADNVNDK
401: SVPVFRSSIS IGDILSRKLI LRDDHIVVGK HMESHTERKH VSFSQMLREQ SGIILNPTKA MKEGDVHKQF ITHKKKFGFI QVPLPRQNKK KTQPLNMR
001: MAEFPEPGTV NPDSDLSNGR AEKPEIDTSA PFESVREAAT RFGGFGFWRP SLNKLPDASQ ENIQEPDIMG LKAQAFELQR ELIVKERETL EVLKELEATK
101: ATVLKLQQRN EAYEEDTLRE EVDSHIKPAG VVLKDLSQAK MNLCKIASIR ESVEQLKNKL NEERAALEKT RERLMEKSLK VFSLEEEEVR VRFAKEGQTG
201: EKDLGMLNEV QRLSRQAQEV KKTGENAELE VVKAMAETES TRDKIRTAKI RLVAARKMKE AAREAEAVAI AEIEAVTGSM NVGKAEAVTI SAEEYSVLAR
301: SARDAEEEAR KRVEDAMSRV EEANVSKKDV LKKVDEAAQE IETSKRVLEE AVERVDAANA SKIEAEEALR KWRSENGQRR RLSSSVNNTS KFKSRRETTT
401: RLMDVNGLHL TYDVVDGSSS SSTVPVLKPT MSIGQILSKK LLLAEDSDMN VANERRKMSL GQMLAKNSSS DKTVSKRSEG KENEKRTKTR KRKSFGFAKI
501: SVLLNKESKN KKKKKKIALN LR
101: ATVLKLQQRN EAYEEDTLRE EVDSHIKPAG VVLKDLSQAK MNLCKIASIR ESVEQLKNKL NEERAALEKT RERLMEKSLK VFSLEEEEVR VRFAKEGQTG
201: EKDLGMLNEV QRLSRQAQEV KKTGENAELE VVKAMAETES TRDKIRTAKI RLVAARKMKE AAREAEAVAI AEIEAVTGSM NVGKAEAVTI SAEEYSVLAR
301: SARDAEEEAR KRVEDAMSRV EEANVSKKDV LKKVDEAAQE IETSKRVLEE AVERVDAANA SKIEAEEALR KWRSENGQRR RLSSSVNNTS KFKSRRETTT
401: RLMDVNGLHL TYDVVDGSSS SSTVPVLKPT MSIGQILSKK LLLAEDSDMN VANERRKMSL GQMLAKNSSS DKTVSKRSEG KENEKRTKTR KRKSFGFAKI
501: SVLLNKESKN KKKKKKIALN LR
Arabidopsis Description
Plant protein of unknown function (DUF827) [Source:TAIR;Acc:AT2G38370]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.