Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P21300_001 | Banana | nucleus | 63.31 | 61.68 |
| Os03t0339700-01 | Rice | nucleus | 47.0 | 36.03 |
| KRH65464 | Soybean | nucleus | 47.96 | 35.71 |
| KRH76097 | Soybean | nucleus | 47.72 | 35.6 |
| EER92305 | Sorghum | nucleus | 44.6 | 34.13 |
| Zm00001d047516_P001 | Maize | nucleus | 44.36 | 33.95 |
| AT3G51720.1 | Thale cress | nucleus | 32.85 | 33.66 |
| GSMUA_Achr8P02810_001 | Banana | mitochondrion | 42.69 | 33.58 |
| Os07t0677900-01 | Rice | nucleus | 41.49 | 33.33 |
| CDY19552 | Canola | mitochondrion | 15.83 | 33.0 |
| PGSC0003DMT400068339 | Potato | nucleus | 44.84 | 32.81 |
| Zm00001d007164_P001 | Maize | nucleus | 42.69 | 32.13 |
| KRH00407 | Soybean | nucleus | 43.41 | 31.64 |
| KRG94824 | Soybean | cytosol | 36.21 | 31.59 |
| CDX78029 | Canola | nucleus | 30.94 | 31.46 |
| Solyc09g042710.2.1 | Tomato | nucleus | 43.17 | 31.41 |
| CDX73702 | Canola | nucleus | 30.7 | 30.99 |
| Bra036780.1-P | Field mustard | nucleus | 30.46 | 30.98 |
| EER97734 | Sorghum | nucleus | 42.69 | 30.8 |
| TraesCS2A01G106600.1 | Wheat | nucleus | 44.6 | 30.79 |
| VIT_13s0067g02400.t01 | Wine grape | nucleus | 38.61 | 30.15 |
| TraesCS2B01G124200.1 | Wheat | nucleus | 45.08 | 29.98 |
| TraesCS2D01G107200.1 | Wheat | nucleus | 44.6 | 29.9 |
| CDY65893 | Canola | nucleus | 35.49 | 29.84 |
| CDY07733 | Canola | cytosol | 23.5 | 29.25 |
| Bra000057.1-P | Field mustard | nucleus | 33.81 | 28.89 |
| HORVU2Hr1G018380.4 | Barley | nucleus | 44.36 | 28.86 |
| CDX93176 | Canola | cytosol | 26.14 | 28.24 |
| CDY06986 | Canola | cytosol | 30.22 | 27.88 |
| Bra016990.1-P | Field mustard | cytosol | 30.22 | 27.88 |
| PGSC0003DMT400074781 | Potato | nucleus | 32.85 | 27.51 |
| CDY70507 | Canola | cytosol, nucleus, plastid | 28.3 | 27.25 |
| Solyc06g050350.2.1 | Tomato | nucleus | 33.81 | 27.17 |
| CDY18389 | Canola | nucleus | 32.85 | 27.13 |
| KRH40785 | Soybean | nucleus | 31.65 | 26.94 |
| AT2G38370.2 | Thale cress | nucleus | 34.77 | 26.9 |
| Bra017122.1-P | Field mustard | nucleus | 32.61 | 26.82 |
| CDY04348 | Canola | nucleus | 17.27 | 26.09 |
| CDY07602 | Canola | nucleus | 29.5 | 25.95 |
| Bra000190.1-P | Field mustard | nucleus | 29.5 | 25.95 |
| CDY24901 | Canola | cytosol | 29.5 | 25.95 |
| KRH31225 | Soybean | cytosol | 34.29 | 25.54 |
| KRG97647 | Soybean | plastid | 34.29 | 25.54 |
| VIT_08s0058g01020.t01 | Wine grape | cytosol | 49.4 | 24.49 |
| KRH73215 | Soybean | cytosol | 32.13 | 24.1 |
| AT2G40480.1 | Thale cress | cytosol | 29.74 | 23.94 |
| KRH14870 | Soybean | nucleus | 32.13 | 22.83 |
| CDY11490 | Canola | nucleus | 13.91 | 21.89 |
| CDY58310 | Canola | nucleus | 13.91 | 21.89 |
| CDY07266 | Canola | cytosol, mitochondrion | 8.39 | 21.6 |
| AT3G56270.1 | Thale cress | cytosol | 21.34 | 19.96 |
| CDX72151 | Canola | cytosol | 20.14 | 19.91 |
| Bra007233.1-P | Field mustard | cytosol | 20.38 | 17.78 |
| CDY27228 | Canola | cytosol | 20.14 | 17.57 |
| Bra007760.1-P | Field mustard | nucleus | 13.43 | 17.45 |
| CDY70964 | Canola | cytosol | 6.95 | 16.67 |
| Bra039972.1-P | Field mustard | cytosol | 7.67 | 12.8 |
| CDY12396 | Canola | cytosol, endoplasmic reticulum, nucleus | 9.59 | 11.87 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P09860_001 | EnsemblPlants:GSMUA_Achr3T09860_001 | EnsemblPlantsGene:GSMUA_Achr3G09860_001 | InterPro:Web | ncoils:Coil | PANTHER:PTHR32054 |
| PANTHER:PTHR32054:SF4 | PFAM:PF05701 | SEG:seg | UniParc:UPI000294D673 | UniProt:M0SDA3 | MapMan:35.1 |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G09860_001]
Coordinates
chr3:-:7164364..7167575
Molecular Weight (calculated)
46460.4 Da
IEP (calculated)
6.621
GRAVY (calculated)
-0.597
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGAVASHSS GAAAVRAEID TSAPFESVKE AVDRFGGSAV WKSQPKQIVN PECSEEVEVI KVVEQAAQLE KDLILKERET LDVLKELELT KKIVDEYEHT
101: DLEKNEDMDD PSIGVNQFPG LILVELEQAK ATLNRTTSDM VGFRTSIKML NMKIEEEKLL LENVQEKLTS KRCEDPCSFL QEIKQLNSEI EQSKKTMEAT
201: KNEVTKLTSE IEQTKASIKT AEFRWFAAKK TEEAAKAAED LSLADIKALM SSNNLITVDE ANRGKLTVED ALRRWTRSEH GQKRHSVQNS TKFKNYAAHH
301: GKDSHVLDSN GSTLVSVMPS GGLLRAPLSI GQILSMKLMD PDSPEEYDQG VWEKENEKPK VSLGQMLNKR HGVLSHQGDT SVSPLKQFSA KRKKLGFVSL
401: PLILAKQSKK NKKKGSL
101: DLEKNEDMDD PSIGVNQFPG LILVELEQAK ATLNRTTSDM VGFRTSIKML NMKIEEEKLL LENVQEKLTS KRCEDPCSFL QEIKQLNSEI EQSKKTMEAT
201: KNEVTKLTSE IEQTKASIKT AEFRWFAAKK TEEAAKAAED LSLADIKALM SSNNLITVDE ANRGKLTVED ALRRWTRSEH GQKRHSVQNS TKFKNYAAHH
301: GKDSHVLDSN GSTLVSVMPS GGLLRAPLSI GQILSMKLMD PDSPEEYDQG VWEKENEKPK VSLGQMLNKR HGVLSHQGDT SVSPLKQFSA KRKKLGFVSL
401: PLILAKQSKK NKKKGSL
001: MAETLEPSLV GEIDTSAPFE SVREAATRFG GFGFWKPSSL NISEASQNEV GMVLKASELE KELIEKEGET LKVLKSLEST KAIVEELKSK IQNKEDKENC
101: DMNVFKELNQ AKMNLCKTTK DLAAIRVSVG LLNKRLEEER AALEKTRERL NSENAAEMSM EIQRLSYEAK EFSRTGENVR YAVNKAVAEI EQTRNKIEAA
201: EMRLIAARKM KEAARAAEAV AIAEIKAVTR RGRRRRRGGN GEETMQEEIL ETIDETAREI RSSRRTLEEG LAKMEAEEGN WWWTEQRRRS SCSAKFKNPP
301: YMMDVKGLNM MMNGDGTSSS VAVLKPTMSI GQILSRKLLL ADESAMMMNG RVSLGQILGK TNFGDREKEK RFNGKRKRFG FANLSVMLNK ESKKKNKKKK
401: IALNLSC
101: DMNVFKELNQ AKMNLCKTTK DLAAIRVSVG LLNKRLEEER AALEKTRERL NSENAAEMSM EIQRLSYEAK EFSRTGENVR YAVNKAVAEI EQTRNKIEAA
201: EMRLIAARKM KEAARAAEAV AIAEIKAVTR RGRRRRRGGN GEETMQEEIL ETIDETAREI RSSRRTLEEG LAKMEAEEGN WWWTEQRRRS SCSAKFKNPP
301: YMMDVKGLNM MMNGDGTSSS VAVLKPTMSI GQILSRKLLL ADESAMMMNG RVSLGQILGK TNFGDREKEK RFNGKRKRFG FANLSVMLNK ESKKKNKKKK
401: IALNLSC
Arabidopsis Description
WEB family protein At3g51720 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCT6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.