Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73702 | Canola | nucleus | 71.01 | 69.98 |
| CDX78029 | Canola | nucleus | 69.53 | 69.02 |
| Bra036780.1-P | Field mustard | nucleus | 69.04 | 68.54 |
| CDY19552 | Canola | mitochondrion | 33.42 | 68.0 |
| CDY04348 | Canola | nucleus | 43.98 | 64.86 |
| CDY07266 | Canola | cytosol, mitochondrion | 24.57 | 61.73 |
| CDY11490 | Canola | nucleus | 28.99 | 44.53 |
| CDY58310 | Canola | nucleus | 28.99 | 44.53 |
| CDY70964 | Canola | cytosol | 18.92 | 44.25 |
| AT2G38370.2 | Thale cress | nucleus | 52.33 | 39.52 |
| Bra007760.1-P | Field mustard | nucleus | 28.75 | 36.45 |
| KRH76097 | Soybean | nucleus | 47.91 | 34.88 |
| KRH65464 | Soybean | nucleus | 47.67 | 34.64 |
| KRG94824 | Soybean | cytosol | 38.82 | 33.05 |
| KRH00407 | Soybean | nucleus | 46.19 | 32.87 |
| GSMUA_Achr3P09860_001 | Banana | nucleus | 33.66 | 32.85 |
| GSMUA_Achr8P21300_001 | Banana | nucleus | 33.91 | 32.24 |
| KRH40785 | Soybean | nucleus | 38.57 | 32.04 |
| Bra039972.1-P | Field mustard | cytosol | 19.41 | 31.6 |
| Solyc09g042710.2.1 | Tomato | nucleus | 44.47 | 31.59 |
| PGSC0003DMT400068339 | Potato | nucleus | 43.98 | 31.4 |
| Os03t0339700-01 | Rice | nucleus | 38.33 | 28.68 |
| EER92305 | Sorghum | nucleus | 37.59 | 28.07 |
| Os07t0677900-01 | Rice | nucleus | 35.38 | 27.75 |
| Zm00001d047516_P001 | Maize | nucleus | 36.12 | 26.97 |
| GSMUA_Achr8P02810_001 | Banana | mitochondrion | 34.4 | 26.42 |
| Zm00001d007164_P001 | Maize | nucleus | 35.87 | 26.35 |
| EER97734 | Sorghum | nucleus | 36.61 | 25.78 |
| TraesCS2A01G106600.1 | Wheat | nucleus | 37.84 | 25.5 |
| AT2G40480.1 | Thale cress | cytosol | 32.19 | 25.29 |
| CDY12396 | Canola | cytosol, endoplasmic reticulum, nucleus | 20.88 | 25.22 |
| TraesCS2D01G107200.1 | Wheat | nucleus | 38.08 | 24.92 |
| TraesCS2B01G124200.1 | Wheat | nucleus | 38.08 | 24.72 |
| HORVU2Hr1G018380.4 | Barley | nucleus | 38.33 | 24.34 |
| VIT_08s0058g01020.t01 | Wine grape | cytosol | 47.67 | 23.07 |
| Zm00001d010610_P001 | Maize | cytosol | 31.45 | 22.98 |
| AT3G56270.1 | Thale cress | cytosol | 25.06 | 22.87 |
| TraesCS1A01G299400.1 | Wheat | cytosol | 30.22 | 22.36 |
| TraesCS1B01G309200.1 | Wheat | cytosol | 29.73 | 22.08 |
| Os05t0476100-01 | Rice | cytosol, nucleus, plastid | 30.47 | 21.91 |
| TraesCS1D01G298300.1 | Wheat | nucleus | 29.98 | 21.79 |
| HORVU1Hr1G070120.3 | Barley | nucleus | 30.96 | 20.39 |
| OQU78181 | Sorghum | nucleus | 27.03 | 7.98 |
Protein Annotations
| MapMan:35.1 | EntrezGene:824335 | ProteinID:AEE78830.1 | ArrayExpress:AT3G51720 | EnsemblPlantsGene:AT3G51720 | RefSeq:AT3G51720 |
| TAIR:AT3G51720 | RefSeq:AT3G51720-TAIR-G | EnsemblPlants:AT3G51720.1 | TAIR:AT3G51720.1 | EMBL:AY069905 | EMBL:AY088925 |
| EMBL:AY113026 | Unigene:At.28434 | ProteinID:CAB63158.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0008150 | GO:GO:0009903 | GO:GO:0009904 |
| GO:GO:0009987 | GO:GO:0016043 | RefSeq:NP_190740.1 | PFAM:PF05701 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR32054 |
| PANTHER:PTHR32054:SF4 | UniProt:Q9SCT6 | UniParc:UPI00000A0EB9 | InterPro:Web | SEG:seg | : |
Description
WEB family protein At3g51720 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCT6]
Coordinates
chr3:+:19184926..19186660
Molecular Weight (calculated)
45956.5 Da
IEP (calculated)
10.068
GRAVY (calculated)
-0.673
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETLEPSLV GEIDTSAPFE SVREAATRFG GFGFWKPSSL NISEASQNEV GMVLKASELE KELIEKEGET LKVLKSLEST KAIVEELKSK IQNKEDKENC
101: DMNVFKELNQ AKMNLCKTTK DLAAIRVSVG LLNKRLEEER AALEKTRERL NSENAAEMSM EIQRLSYEAK EFSRTGENVR YAVNKAVAEI EQTRNKIEAA
201: EMRLIAARKM KEAARAAEAV AIAEIKAVTR RGRRRRRGGN GEETMQEEIL ETIDETAREI RSSRRTLEEG LAKMEAEEGN WWWTEQRRRS SCSAKFKNPP
301: YMMDVKGLNM MMNGDGTSSS VAVLKPTMSI GQILSRKLLL ADESAMMMNG RVSLGQILGK TNFGDREKEK RFNGKRKRFG FANLSVMLNK ESKKKNKKKK
401: IALNLSC
101: DMNVFKELNQ AKMNLCKTTK DLAAIRVSVG LLNKRLEEER AALEKTRERL NSENAAEMSM EIQRLSYEAK EFSRTGENVR YAVNKAVAEI EQTRNKIEAA
201: EMRLIAARKM KEAARAAEAV AIAEIKAVTR RGRRRRRGGN GEETMQEEIL ETIDETAREI RSSRRTLEEG LAKMEAEEGN WWWTEQRRRS SCSAKFKNPP
301: YMMDVKGLNM MMNGDGTSSS VAVLKPTMSI GQILSRKLLL ADESAMMMNG RVSLGQILGK TNFGDREKEK RFNGKRKRFG FANLSVMLNK ESKKKNKKKK
401: IALNLSC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.