CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07602	Canola	nucleus	84.18	84.18
CDX93176	Canola	cytosol	56.96	69.95
CDY06986	Canola	cytosol	65.4	68.58
AT2G40480.1	Thale cress	cytosol	72.57	66.41
CDX72151	Canola	cytosol	39.87	44.79
CDY27228	Canola	cytosol	40.08	39.75
KRH73215	Soybean	cytosol	43.04	36.69
KRH31225	Soybean	cytosol	43.25	36.61
KRG97647	Soybean	plastid	42.62	36.07
VIT_13s0067g02400.t01	Wine grape	nucleus	40.3	35.77
KRH14870	Soybean	nucleus	42.62	34.41
CDY19552	Canola	mitochondrion	14.13	33.5
CDX78029	Canola	nucleus	27.0	31.22
CDX73702	Canola	nucleus	27.0	30.99
CDY07266	Canola	cytosol, mitochondrion	10.13	29.63
GSMUA_Achr3P09860_001	Banana	nucleus	25.95	29.5
PGSC0003DMT400074781	Potato	nucleus	30.8	29.32
CDY65893	Canola	nucleus	29.96	28.63
Solyc06g050350.2.1	Tomato	nucleus	31.22	28.52
GSMUA_Achr8P21300_001	Banana	nucleus	25.74	28.5
CDY04348	Canola	nucleus	16.46	28.26
CDY07733	Canola	cytosol	19.2	27.16
CDY70507	Canola	cytosol, nucleus, plastid	24.26	26.56
CDY18389	Canola	nucleus	28.27	26.53
Os03t0339700-01	Rice	nucleus	30.38	26.47
Os07t0677900-01	Rice	nucleus	28.69	26.2
EER92305	Sorghum	nucleus	29.75	25.87
Zm00001d007164_P001	Maize	nucleus	29.96	25.63
EER97734	Sorghum	nucleus	31.01	25.43
Zm00001d047516_P001	Maize	nucleus	28.27	24.59
GSMUA_Achr8P02810_001	Banana	mitochondrion	27.22	24.34
TraesCS2A01G106600.1	Wheat	nucleus	31.01	24.34
HORVU2Hr1G018380.4	Barley	nucleus	31.43	23.24
TraesCS2B01G124200.1	Wheat	nucleus	30.59	23.13
TraesCS2D01G107200.1	Wheat	nucleus	29.75	22.67
CDY11490	Canola	nucleus	12.24	21.89
CDY58310	Canola	nucleus	12.24	21.89
Os05t0476100-01	Rice	cytosol, nucleus, plastid	25.74	21.55
TraesCS1B01G309200.1	Wheat	cytosol	24.26	20.99
TraesCS1A01G299400.1	Wheat	cytosol	23.63	20.36
TraesCS1D01G298300.1	Wheat	nucleus	24.05	20.36
Zm00001d010610_P001	Maize	cytosol	22.36	19.03
HORVU1Hr1G070120.3	Barley	nucleus	24.26	18.61
CDY70964	Canola	cytosol	6.54	17.82
CDY12396	Canola	cytosol, endoplasmic reticulum, nucleus	12.03	16.91
OQU78181	Sorghum	nucleus	20.25	6.97

Protein Annotations

EnsemblPlants:CDY24901	EnsemblPlantsGene:GSBRNA2T00028683001	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF13
PFAM:PF05701	ProteinID:CDY24901	ProteinID:CDY24901.1	SEG:seg	UniParc:UPI0004EEAFBC	UniProt:A0A078GHQ2
MapMan:35.1	:	:	:	:	:

Description

BnaC03g22710DBnaC03g22710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHQ2]

Coordinates

chrLK032166:-:34780..36898

Molecular Weight (calculated)

54033.4 Da

IEP (calculated)

8.142

GRAVY (calculated)

-0.722

Length

474 amino acids

Sequence
(BLAST)

001: MSEEEHQSCV HDVNIQTKFE NFDPAGVSHA PGIRKVSSRA EIDTSPPFGS VQEAVTWFGG RGYWVPFKLQ DNYNGVGEFN IKRMEEHAAE LEKDLIVKEL
101: ETLDVLEALG STKMIVEDLK RQLHQESLRS AENLSSDIKE MNNEHCDHNP MSSPDLILME LKQAKINLSK TMDDLVMIQS SVESLNKKMK EEKEFLDKTR
201: EKLTYGFGGA VSLAEELSRV RVKPDETPRE HVKMVAETGL NQQNKNCLRT AEMRLVAARK MEEAARAAEA LAIAEIAMLS SLQSNDESEF FFPEPPSSPL
301: TPRGLRNVTD SSRSGILKKL EEATQGVKQS KQDLEAALNR VEIANVKQLA AENAFRGWTK HTPTSQTRRS FFRHLNRQHE PVLKSNVSMR DVLRRKQVPK
401: EEVVVSERQS LEGQRRNVNL SQMLRELKHD IKSSVRGEKE EVREDKQFVT QRRKFGFIHI TLPMQKQSKK KTSV

Best Arabidopsis Sequence Match ( AT2G40480.1 )
(BLAST)

001: MALAEEQHQN YHVAEAIPGT PGIHDVRIQP GSENSGFCVD PVGVSNVPGI RRVGLRAEID TSPPFGSVQE AVTRFGGRGY WVPFKLDDTF NGEFDIKRME
101: EHAAELEKDL IVKELETLDV LEALGSTKRI VEDLKRQLQQ EALRCSDQLS SDIKEMNDEH CHHNPMSSPD LILMELKQAK MNLGKTMDNL VVIQSSVESL
201: NKKMKEEKDF LEKTRAKLTY GFGGPVSLAE ELSRIKVKPQ VQDEPLREQV KMVAEADETG LNLQNKNSLR TAEMRLVAAR KMEEAAKAAE ALAIAEITML
301: SSNGESQDDD SEFCFPEPPR SPVTPRGLRI DNDFSTDKSS RRGILKKLEE ATEGVKQSKQ ALEAALNRVE IANVKQLAAE NAFRGWTKDS LKGDNFTPLN
401: HTRRSFFSHL NKHHEPLDIL PKPVLKSNIS MRDVLRRKQV PKEDVVAPQR QSLEGQIPRR NVNLSQMLKE LKQDVKFSAR GEKEEVHEEK QYVTQRRKFG
501: FIHITLPLQK QSKKKSSL

Arabidopsis Description

WEB family protein At2g40480 [Source:UniProtKB/Swiss-Prot;Acc:Q5XVC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.