Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27228 | Canola | cytosol | 84.36 | 74.48 |
| AT3G56270.1 | Thale cress | cytosol | 55.69 | 52.69 |
| CDX93176 | Canola | cytosol | 41.23 | 45.08 |
| CDY24901 | Canola | cytosol | 44.79 | 39.87 |
| CDY06986 | Canola | cytosol | 42.18 | 39.38 |
| CDY07602 | Canola | nucleus | 42.89 | 38.19 |
| CDY07266 | Canola | cytosol, mitochondrion | 11.61 | 30.25 |
| CDY19552 | Canola | mitochondrion | 13.03 | 27.5 |
| KRH31225 | Soybean | cytosol | 35.07 | 26.43 |
| CDY04348 | Canola | nucleus | 16.59 | 25.36 |
| VIT_13s0067g02400.t01 | Wine grape | nucleus | 31.99 | 25.28 |
| KRG97647 | Soybean | plastid | 33.41 | 25.18 |
| CDX73702 | Canola | nucleus | 23.7 | 24.21 |
| KRH73215 | Soybean | cytosol | 31.75 | 24.1 |
| CDX78029 | Canola | nucleus | 22.75 | 23.41 |
| KRH14870 | Soybean | nucleus | 32.23 | 23.17 |
| GSMUA_Achr8P21300_001 | Banana | nucleus | 22.04 | 21.73 |
| Os07t0677900-01 | Rice | nucleus | 26.07 | 21.19 |
| CDY70507 | Canola | cytosol, nucleus, plastid | 21.56 | 21.02 |
| Zm00001d007164_P001 | Maize | nucleus | 27.49 | 20.94 |
| CDY07733 | Canola | cytosol | 16.59 | 20.9 |
| PGSC0003DMT400074781 | Potato | nucleus | 24.64 | 20.88 |
| EER92305 | Sorghum | nucleus | 26.78 | 20.73 |
| Os03t0339700-01 | Rice | nucleus | 26.54 | 20.59 |
| CDY65893 | Canola | nucleus | 24.17 | 20.56 |
| EER97734 | Sorghum | nucleus | 27.96 | 20.42 |
| CDY58310 | Canola | nucleus | 12.8 | 20.38 |
| CDY11490 | Canola | nucleus | 12.8 | 20.38 |
| GSMUA_Achr3P09860_001 | Banana | nucleus | 19.91 | 20.14 |
| Solyc06g050350.2.1 | Tomato | nucleus | 24.41 | 19.85 |
| Zm00001d047516_P001 | Maize | nucleus | 25.59 | 19.82 |
| TraesCS2A01G106600.1 | Wheat | nucleus | 26.78 | 18.71 |
| CDY18389 | Canola | nucleus | 21.8 | 18.22 |
| TraesCS2B01G124200.1 | Wheat | nucleus | 26.07 | 17.54 |
| TraesCS2D01G107200.1 | Wheat | nucleus | 25.59 | 17.36 |
| HORVU2Hr1G018380.4 | Barley | nucleus | 26.3 | 17.32 |
| CDY70964 | Canola | cytosol | 7.11 | 17.24 |
| GSMUA_Achr8P02810_001 | Banana | mitochondrion | 21.09 | 16.79 |
| Os05t0476100-01 | Rice | cytosol, nucleus, plastid | 22.27 | 16.61 |
| TraesCS1A01G299400.1 | Wheat | cytosol | 21.56 | 16.55 |
| CDY12396 | Canola | cytosol, endoplasmic reticulum, nucleus | 13.03 | 16.32 |
| TraesCS1D01G298300.1 | Wheat | nucleus | 21.56 | 16.25 |
| TraesCS1B01G309200.1 | Wheat | cytosol | 21.09 | 16.24 |
| Zm00001d010610_P001 | Maize | cytosol | 19.67 | 14.9 |
| HORVU1Hr1G070120.3 | Barley | nucleus | 21.33 | 14.56 |
| OQU78181 | Sorghum | nucleus | 18.25 | 5.59 |
Protein Annotations
| EnsemblPlants:CDX72151 | EnsemblPlantsGene:GSBRNA2T00155975001 | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF13 | ProteinID:CDX72151 |
| ProteinID:CDX72151.1 | SEG:seg | UniParc:UPI0004EE69A7 | MapMan:35.1 | : | : |
Description
BnaC08g27230D
Coordinates
chrLK031795:-:2701083..2702900
Molecular Weight (calculated)
48642.7 Da
IEP (calculated)
7.611
GRAVY (calculated)
-0.763
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERRLQKNP AAEAIPGTPR IRDVRIVSGS EVTGLCSRGS SRVPFKLKDN YDGVGEFDLK KMEENAAKLE KDLIMKELET LDFLEALGST KKIVKDLKLE
101: LQQQQPMRCM ESPEHLHSQI KEMNHDERCH RSSPMRSPDM ILMELKQANM NLGKTMEDLS MIRSYVESLN MKTVEHKDFL GVASLAEELN SLRLKHDDEE
201: RFITKNVSVN PKCEQVKMVV ETNDNKHSNA CLKTAKMRLV AARKMEEADR AAEALAIAEM AILSSKKDQE EFCFPEPPRS PLTLKEQMQE DISIEIMRKL
301: EEANEEVKQS QRALENALNR VEIANVKQLE AEDAVRQWNI ESWKDQKAIR AKRPMRDDNI PRRSFLSHVS QHEPVDNLPK PMLKRNVSVG SGLNRKQVPN
401: IDEKHLRRKF RFMHNTVPEQ IE
101: LQQQQPMRCM ESPEHLHSQI KEMNHDERCH RSSPMRSPDM ILMELKQANM NLGKTMEDLS MIRSYVESLN MKTVEHKDFL GVASLAEELN SLRLKHDDEE
201: RFITKNVSVN PKCEQVKMVV ETNDNKHSNA CLKTAKMRLV AARKMEEADR AAEALAIAEM AILSSKKDQE EFCFPEPPRS PLTLKEQMQE DISIEIMRKL
301: EEANEEVKQS QRALENALNR VEIANVKQLE AEDAVRQWNI ESWKDQKAIR AKRPMRDDNI PRRSFLSHVS QHEPVDNLPK PMLKRNVSVG SGLNRKQVPN
401: IDEKHLRRKF RFMHNTVPEQ IE
001: MAERQQSPAA ETIPGTPVIR EVRTGTGSEN FNPENTRRGC LRAEIDISPQ LYGGRGFWVP FNLEDNYDCV GEFDIKRMEE QTVELEKDLI MKELETLDLL
101: EALGSTKRIF EDLKWQLQQQ ALRCKETPQH LRSHSKEMVD EHCHRNPLKS PDLMTMEMKQ AGMNLCKTMD DLALIHSYAE SLNMKTKEEK DVLGVASLAE
201: ELNSLKFKPA GPDQVERFNT ENLPVNPQCE QIKMVVETYD TAFHKQSKTC PRTADMRLVA ARKMEEAARA AEALALAEMT ILSSRRNQDA LCFPKTPCFP
301: LTLKAQMNKE LSTNVSRIEI LRKLEEANEE VKQSKQALEV ALNRVEIASV KQLEAEEAFR QWNIESWKDQ KAVGAKRSMK RESFPQRSFL SHINQHEPLI
401: DLPEPMLKRN VSMGNALNRK DEKQLVTPRR KFRFIQTHQA SIRKTE
101: EALGSTKRIF EDLKWQLQQQ ALRCKETPQH LRSHSKEMVD EHCHRNPLKS PDLMTMEMKQ AGMNLCKTMD DLALIHSYAE SLNMKTKEEK DVLGVASLAE
201: ELNSLKFKPA GPDQVERFNT ENLPVNPQCE QIKMVVETYD TAFHKQSKTC PRTADMRLVA ARKMEEAARA AEALALAEMT ILSSRRNQDA LCFPKTPCFP
301: LTLKAQMNKE LSTNVSRIEI LRKLEEANEE VKQSKQALEV ALNRVEIASV KQLEAEEAFR QWNIESWKDQ KAVGAKRSMK RESFPQRSFL SHINQHEPLI
401: DLPEPMLKRN VSMGNALNRK DEKQLVTPRR KFRFIQTHQA SIRKTE
Arabidopsis Description
WEB family protein At3g56270 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYL6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.