Factsheet for HORVU6Hr1G075950.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G075650.1
HORVU7Hr1G038130.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	HORVU6Hr1G075650.1	AT3G47620.1	21798944
AT3G01180.1	HORVU7Hr1G038130.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G336400.1	Wheat	plastid	94.96	95.1
TraesCS6D01G287000.1	Wheat	plastid	92.15	93.82
TraesCS6A01G307800.1	Wheat	plastid	92.59	92.46
KRH01182	Soybean	cytosol	30.81	78.2
Os02t0744700-01	Rice	nucleus	76.15	75.92
Zm00001d052263_P001	Maize	plastid	77.19	74.43
Zm00001d018033_P001	Maize	plastid	75.7	74.27
EES05532	Sorghum	plastid	77.04	73.86
CDY34695	Canola	plastid	15.26	72.03
Bra021486.1-P	Field mustard	endoplasmic reticulum	21.19	67.77
CDY43274	Canola	plastid	61.93	59.89
CDY37538	Canola	plastid	59.7	59.53
KRG93537	Soybean	plastid	61.19	53.36
KRH18473	Soybean	plastid	61.33	53.35
AT3G01180.1	Thale cress	plastid	61.78	52.65
Bra039138.1-P	Field mustard	plastid	60.0	52.53
Solyc02g088000.2.1	Tomato	nucleus, plastid	59.41	52.21
PGSC0003DMT400003356	Potato	cytosol	59.11	52.02
VIT_14s0108g00940.t01	Wine grape	plastid	60.74	51.25
HORVU7Hr1G038420.1	Barley	plastid	64.0	50.47
KRH15937	Soybean	plastid	9.48	49.23
HORVU1Hr1G035960.19	Barley	cytosol, plastid	56.89	47.82
CDY55806	Canola	plastid	38.07	46.47
HORVU7Hr1G025390.4	Barley	cytosol, plastid	37.19	43.65
Bra021487.1-P	Field mustard	cytosol	22.07	40.16
CDY34693	Canola	endoplasmic reticulum, golgi	20.3	34.42
HORVU2Hr1G090980.3	Barley	plastid	30.07	34.23
HORVU7Hr1G012380.5	Barley	plastid	30.22	33.83
HORVU1Hr1G080950.5	Barley	plastid	25.04	17.68
HORVU2Hr1G106410.9	Barley	cytosol	25.78	13.09
HORVU1Hr1G021590.5	Barley	mitochondrion	25.04	10.61
HORVU0Hr1G005550.1	Barley	cytosol	0.74	2.55
HORVU0Hr1G005540.2	Barley	cytosol	2.07	1.38

Protein Annotations

EnsemblPlants:HORVU6Hr1G075950.4	EnsemblPlantsGene:HORVU6Hr1G075950	Gene3D:3.40.50.2000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0016740	HAMAP:MF_00484	InterPro:GS/SS	InterPro:Starch_synth_cat_dom	KEGG:00500+2.4.1.21	PANTHER:PTHR12526
PANTHER:PTHR12526:SF371	PFAM:PF08323	PFAM:PF13692	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF53756
TIGRFAMs:TIGR02095	UniParc:UPI000B466CAF	UniProt:A0A287URD5	MapMan:3.2.2.4.2	:	:

Description

No Description!

Coordinates

chrchr6H:+:522762448..522768170

Molecular Weight (calculated)

73848.5 Da

IEP (calculated)

6.625

GRAVY (calculated)

-0.266

Length

675 amino acids

Sequence
(BLAST)

001: MSGYIASSSA AFLLLVASSS SCSSSSPRRW RSCSPRPYGG AADTRLHWAR RGFSRDGPVP CRRPCAAAGG EEGAAAGESS EGVSGQRAKV KAAENKDAAS
101: QKSVASAPRL DSRVAEQNGA AGIRSKADPS APVSAAASGY WKDVVVAEQV GAMVDTGGDA AEVSSSPVDS ENKGSGPLAG PNVMNVIVVA SECAPFCKTG
201: GLGDVVGALP KALARRGHRV MVVIPKYGDY AEARDLGVRK RYKVAGQDSE VSYFHSYIDG VDFVFLEAPP FRHRHNDIYG GERPDVLKRM ILFCKAAVEV
301: PWYAPCGGTI YGDGNLVFIA NDWHTALLPV YLKAYYRDNG LMQYTRSVLV IHNIAHQGRG PVDDFNMMDL PEHYIDHFKL YDPLCGEHNN VFAAGLKMAD
401: RVVTVSHGYM WELKTMEGGW GLHDIINQND WKLDGIVNGI DTAEWNPAVD VHLHSDDYTN YTRDTLDTGK RQCKAALQRE LGLQVRDDVP LIGFIGRLDH
501: QKGVDIIAEA MPWITQQDVQ LVMLGTGRPD LEDMLRRFEG EHRDKVRGWV GFSVRMAHRI TAGADILLMP SLFEPCGLNQ LYAMAYGTVP VVHAVGGLRD
601: TVAPFDPFGG TGLGWTFDRA DAGRMIDALG HCLNTYWNYK ESWRGLQVRG MSQDLSWDHA AELYENVLVK AKYQW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.