Factsheet for Solyc02g088000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g078380.1.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g116320.2.1
Solyc06g072990.1.1
Solyc11g005270.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	Solyc03g116320.2.1	AT3G47620.1	21798944
AT3G01180.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT3G01180.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT3G01180.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT3G01180.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT3G01180.1	Solyc03g078380.1.1	AT5G13810.1	21798944
AT3G01180.1	Solyc11g005270.1.1	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003356	Potato	cytosol	96.35	96.48
KRH01182	Soybean	cytosol	28.78	83.08
CDY34695	Canola	plastid	14.97	80.42
Bra021486.1-P	Field mustard	endoplasmic reticulum	20.31	73.93
CDY37538	Canola	plastid	59.77	67.8
CDY43274	Canola	plastid	61.46	67.62
VIT_14s0108g00940.t01	Wine grape	plastid	68.1	65.38
KRH18473	Soybean	plastid	63.15	62.5
KRG93537	Soybean	plastid	62.24	61.76
AT3G01180.1	Thale cress	plastid	63.15	61.24
Bra039138.1-P	Field mustard	plastid	61.46	61.22
TraesCS6D01G287000.1	Wheat	plastid	51.69	59.88
TraesCS6B01G336400.1	Wheat	plastid	52.21	59.5
HORVU6Hr1G075950.4	Barley	plastid	52.21	59.41
Os02t0744700-01	Rice	nucleus	52.21	59.23
TraesCS6A01G307800.1	Wheat	plastid	52.08	59.17
EES05532	Sorghum	plastid	53.39	58.24
OQU91730	Sorghum	cytosol	51.56	57.89
Zm00001d052263_P001	Maize	plastid	52.21	57.29
Zm00001d018033_P001	Maize	plastid	50.91	56.83
CDY55806	Canola	plastid	39.97	55.52
Os10t0437600-00	Rice	plastid	53.26	54.61
TraesCS1B01G155700.3	Wheat	plastid	52.73	54.51
TraesCS1A01G137200.1	Wheat	plastid	53.12	54.33
TraesCS1D01G138100.2	Wheat	plastid	52.99	54.19
Zm00001d037234_P005	Maize	plastid	52.47	53.38
Zm00001d014150_P005	Maize	plastid	53.52	53.1
KXG19644	Sorghum	plastid	53.12	52.99
KRH15937	Soybean	plastid	8.72	51.54
TraesCS7A01G189000.1	Wheat	plastid	52.86	51.01
TraesCS7B01G093800.2	Wheat	plastid	52.99	51.0
Os06t0229800-01	Rice	plastid	53.39	50.62
TraesCS7D01G190100.1	Wheat	plastid	52.6	50.56
HORVU1Hr1G035960.19	Barley	cytosol, plastid	52.6	50.31
Bra021487.1-P	Field mustard	cytosol	23.96	49.6
HORVU7Hr1G038420.1	Barley	plastid	52.47	47.08
CDY34693	Canola	endoplasmic reticulum, golgi	22.66	43.72
Solyc03g083090.2.1	Tomato	plastid	34.24	41.03
Solyc08g083320.2.1	Tomato	plastid	27.47	35.05
Solyc07g042830.2.1	Tomato	plastid	21.74	27.2
Solyc02g091770.1.1	Tomato	mitochondrion	8.07	20.53
Solyc02g071040.2.1	Tomato	nucleus	24.35	18.68
Solyc02g091760.1.1	Tomato	cytosol	4.17	17.11
Solyc02g080570.2.1	Tomato	nucleus, plastid	23.05	14.39

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.2	Gene3D:3.40.50.2000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009011	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1
UniProt:K4BBV6	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF542
SUPFAM:SSF53756	EnsemblPlantsGene:Solyc02g088000.2	EnsemblPlants:Solyc02g088000.2.1	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI00027682F4
SEG:seg	:	:	:	:	:

Description

Starch synthase, chloroplastic/amyloplastic [Source:UniProtKB/TrEMBL;Acc:K4BBV6]

Coordinates

chr2:+:50230576..50236988

Molecular Weight (calculated)

85407.3 Da

IEP (calculated)

6.101

GRAVY (calculated)

-0.365

Length

768 amino acids

Sequence
(BLAST)

001: MENSIVLHTG NQFHPSLPFF SFRPKKLSRI HGSSREQMWR IKRVKATGEN SGEAASADES DDALQVTIEK SKKVLAMQQD LLQQIAERRK VVSSIKSSLA
101: DATGTYDGGS GSLSDVDIPD VDKDYNVTVP STAATPITDV DKNTPPAISQ DFVESKREVK RDLADERAPP LSRSSITASS QTSSTVSSKR ILNVPPETPK
201: FSQETLLNVN SRKSLVDVPG KKIQSYMPSL CKESSAQSLV EKRNENLEGS SAEANEETED LVNIDEKPPP LAGTNVMNII LVASECAPWS KTGGLGDVAG
301: ALPKALARRG HRVMVVAPRY DNYPEPQDSG VRKIYKVHGQ DVEVTYFQAF IDGVDFVFID SHMFRHIGNN IYGGNRVDIL KRMVLFCKAA IEVPWHVPCG
401: GVCYGDGNLV FIANDWHTAL LPVYLKAYYR DNGIMNYTRS VLVIHNIAHQ GRGPLEDFSY VDLPPHYMDP FKLYDPVGGE HFNIFAAGLK TADRVVTVSH
501: GYSWELKTSE GGWGLHQIIN ENDWKLRGIV NGIDTKEWNP ELDVHLQSDG YVNYSLDTLQ TGKPQCKAAL QKELGLPVRD DVPLIGFIGR LDPQKGVDLI
601: AEAVPWMMGQ DVQLVMLGTG RPDLEQMLRQ FECQHNDKIR GWVGFSVKTS HRITAGADIL LMPSRFEPCG LNQLYAMTYG TIPVVHAVGG LRDTVQPFDP
701: FNESGLGWTF SRAEANQLIH ALGNCLLTYR EYKKSWEGIQ TRCMTQDLSW DNAAQNYEEV LIAAKYQW

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.