Factsheet for Solyc03g083090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047731	Potato	plastid	97.19	97.19
TraesCS7B01G018600.1	Wheat	cytosol	57.88	71.21
Zm00001d045261_P006	Maize	plastid	59.91	68.57
VIT_16s0098g01780.t01	Wine grape	plastid	65.52	66.35
HORVU7Hr1G025390.4	Barley	cytosol, plastid	58.97	65.74
KRH53506	Soybean	plastid	64.43	65.14
KRH64431	Soybean	plastid	65.99	64.98
AT5G24300.1	Thale cress	plastid	65.99	64.88
Bra009747.1-P	Field mustard	plastid	64.27	63.29
CDX88091	Canola	plastid	64.27	63.29
CDX80428	Canola	plastid	63.96	62.98
Os06t0160700-01	Rice	plastid	60.06	60.06
TraesCS7A01G120300.1	Wheat	plastid	60.22	59.94
KXG19354	Sorghum	plastid	60.37	59.81
TraesCS7D01G117800.1	Wheat	plastid	60.53	59.24
GSMUA_Achr3P03290_001	Banana	plastid	60.84	56.44
KRH16258	Soybean	extracellular	11.7	55.15
Solyc08g083320.2.1	Tomato	plastid	33.39	35.55
Solyc02g088000.2.1	Tomato	nucleus, plastid	41.03	34.24
Solyc07g042830.2.1	Tomato	plastid	22.78	23.78
Solyc02g091770.1.1	Tomato	mitochondrion	9.67	20.53
Solyc02g071040.2.1	Tomato	nucleus	26.83	17.18
Solyc02g091760.1.1	Tomato	cytosol	4.99	17.11
Solyc02g080570.2.1	Tomato	nucleus, plastid	24.65	12.85

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.1	Gene3D:3.40.50.2000	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009011	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0010021	GO:GO:0016740	GO:GO:0016757
GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1	UniProt:K4BI85	HAMAP:MF_00484	PFAM:PF00534
PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF431	SUPFAM:SSF53756	EnsemblPlantsGene:Solyc03g083090.2	EnsemblPlants:Solyc03g083090.2.1
InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI000276892A	:	:	:

Description

Starch synthase 1, chloroplastic/amyloplastic [Source:Projected from Arabidopsis thaliana (AT5G24300) UniProtKB/Swiss-Prot;Acc:Q9FNF2]

Coordinates

chr3:-:52906993..52918178

Molecular Weight (calculated)

70797.1 Da

IEP (calculated)

6.142

GRAVY (calculated)

-0.219

Length

641 amino acids

Sequence
(BLAST)

001: MGSLRTPTNL SNKSCLCVSG RVVKGLRVER QVGLGFSWLL KGRRNRKVQS LCVTSSVSDG SSIAENKKVS EGLLLGPERD GSGSVVGFQL IPHSVAGDAT
101: MVESHDIVAN DRDDLREDAE EMEETPIKLT FNIIFVTAEA APYSKTGGLG DVCGSLPMAL AARGHRVMVV SPRYLNGGPS DEKYANAVDL DVRATVHCFG
201: DAQEVAFYHE YRAGVDWVFV DHSSYRRPGT PYGDIYGAFG DNQFRFTLLS HAACEAPLVL PLGGFTYGEK CLFLANDWHA SLVPLLLAAK YRPYGVYKDA
301: RSIVAIHNIA HQGVEPAATY NNLGLPPQWY GALEWIFPTW ARAHALDTGE TVNVLKGAIS VADRILTVSQ GYSWEITTPE GGYGLHELLS SRQSVLNGIT
401: NGIDVNDWNP STDEHIASHY SINDLSGKAQ CKTDLQKELG LPIRPDCPLI GFIGRLDYQK GVDIILSAIP ELLQKDVQFV MLGSGEKQYE DWMRHTENLF
501: KDKFRAWVGF NVPVSHRITA GCDILLMPSR FEPCGLNQLY AMRYGTIPVV HSTGGLRDTV KDFNPYAQEG KGEGTGWTFS PLTSEKLLDT LKLAIGTYTE
601: HKSSWEGLMK RGMGRDYSWE NAAIQYEQVF TWAFMDPPYV R

Best Arabidopsis Sequence Match ( AT5G24300.2 )
(BLAST)

001: MASLQISGSV KFEPFVGFNR IRHFRPIASL GFPRFRRRFS IGRSLLLRRS SSFSGDSRES DEERFITDAE RDGSGSVLGF QLTPPGDQQT VSTSTGEITH
101: HEEKKEAIDQ IVMADFGVPG NRAVEEGAAE VGIPSGKAEV VNNLVFVTSE AAPYSKTGGL GDVCGSLPIA LAGRGHRVMV ISPRYLNGTA ADKNYARAKD
201: LGIRVTVNCF GGSQEVSFYH EYRDGVDWVF VDHKSYHRPG NPYGDSKGAF GDNQFRFTLL CHAACEAPLV LPLGGFTYGE KSLFLVNDWH AGLVPILLAA
301: KYRPYGVYKD ARSILIIHNL AHQGVEPAAT YTNLGLPSEW YGAVGWVFPT WARTHALDTG EAVNVLKGAI VTSDRIITVS QGYAWEITTV EGGYGLQDLL
401: SSRKSVINGI TNGINVDEWN PSTDEHIPFH YSADDVSEKI KCKMALQKEL GLPIRPECPM IGFIGRLDYQ KGIDLIQTAG PDLMVDDIQF VMLGSGDPKY
501: ESWMRSMEET YRDKFRGWVG FNVPISHRIT AGCDILLMPS RFEPCGLNQL YAMRYGTIPV VHGTGGLRDT VENFNPYAEG GAGTGTGWVF TPLSKDSMVS
601: ALRLAAATYR EYKQSWEGLM RRGMTRNYSW ENAAVQYEQV FQWVFMDPPY VS

Arabidopsis Description

SS1Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QN76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.