Factsheet for VIT_16s0098g01780.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G018600.1	Wheat	cytosol	59.87	72.74
Zm00001d045261_P006	Maize	plastid	61.77	69.82
HORVU7Hr1G025390.4	Barley	cytosol, plastid	60.98	67.13
AT5G24300.1	Thale cress	plastid	68.4	66.41
KRH53506	Soybean	plastid	66.35	66.25
PGSC0003DMT400047731	Potato	plastid	66.98	66.15
Bra009747.1-P	Field mustard	plastid	67.77	65.9
CDX88091	Canola	plastid	67.77	65.9
KRH64431	Soybean	plastid	67.61	65.75
Solyc03g083090.2.1	Tomato	plastid	66.35	65.52
CDX80428	Canola	plastid	66.82	64.98
Os06t0160700-01	Rice	plastid	63.19	62.4
KXG19354	Sorghum	plastid	62.24	60.9
TraesCS7A01G120300.1	Wheat	plastid	61.93	60.87
TraesCS7D01G117800.1	Wheat	plastid	62.4	60.31
KRH16258	Soybean	extracellular	12.8	59.56
GSMUA_Achr3P03290_001	Banana	plastid	63.03	57.74
VIT_02s0025g02790.t01	Wine grape	plastid	33.49	35.04
VIT_15s0048g02600.t01	Wine grape	plastid	33.02	34.04
VIT_14s0108g00940.t01	Wine grape	plastid	41.55	32.88
VIT_11s0065g00150.t01	Wine grape	plastid	21.8	22.81
VIT_10s0003g02880.t01	Wine grape	plastid	27.17	17.01
VIT_07s0205g00090.t01	Wine grape	plastid	5.21	15.07
VIT_07s0205g00110.t01	Wine grape	cytosol, nucleus	11.06	14.4
VIT_10s0116g01730.t01	Wine grape	plastid	25.75	10.67

Protein Annotations

KEGG:00500+2.4.1.21	EntrezGene:100250417	wikigene:100250417	MapMan:3.2.2.4.1	Gene3D:3.40.50.2000	ProteinID:CCB48050
ProteinID:CCB48050.1	UniProt:F6H795	EMBL:FN595247	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009011	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1
EntrezGene:LOC100250417	wikigene:LOC100250417	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526
PANTHER:PTHR12526:SF431	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGR:TC53551	TIGR:TC67047	TIGR:TC69205
TIGRFAMs:TIGR02095	UniParc:UPI0001985040	ArrayExpress:VIT_16s0098g01780	EnsemblPlantsGene:VIT_16s0098g01780	EnsemblPlants:VIT_16s0098g01780.t01	unigene:Vvi.2667
RefSeq:XP_002277372	RefSeq:XP_002277372.1	SEG:seg	:	:	:

Description

Starch synthase, chloroplastic/amyloplastic [Source:UniProtKB/TrEMBL;Acc:F6H795]

Coordinates

chr16:-:21844781..21851539

Molecular Weight (calculated)

69757.0 Da

IEP (calculated)

6.314

GRAVY (calculated)

-0.221

Length

633 amino acids

Sequence
(BLAST)

001: MESLQSPLVL SSKLLPNSLK KPVLEVGFAC FFKQRRVIQS VSIKRSVVCC SRKGGGGGSQ DGSSAMLVNT DKKDASDSVG FHLVPPPSGD NGVIDPHEKL
101: STQKEAETGN SEGEEERKTK VTYNIVFVTS ESAPYSKTGG LGDVCGSLPI ALAAHGHRVM VVSPRYQNGT CSDEIFSGAS DLEHPIKVHC FGGVQEVSFF
201: HEYRAGVDWV FVDHPSYHRP GNPYGDGYGA FGDNQFRFTL LCHAACEAPL VLPLGGFTYG EKCLFLVNDW HASLVPVLLA AKYRPHGVYK DARTVLVIHN
301: LAHQGVEPAV TYDNLGLPPE WYGAVEWVFP TWARTHALDT GQAVNLLKGA IVTVDRILTV SKGYAWEVTT PEGGYGLHEL LTSRKAVING ITNGIDVSEW
401: DPSSDEHIPF HYSAEDLSGK VQCKIALQKE LSLPIRPDCP LIGFIGRLDY QKGIDVIRLA TPELMGEDVQ LVMLGSGNPE DEEWMRVMES TYRDKFRGWV
501: GFNVPISHRI TASCDILLMP SRFEPCGLNQ LYAMRYGAVP VVHGTGGLRD TVENFNPYAG GGSGEGTGWT FSPLSKDTML AALRVAIRTY REHKPSWERL
601: MKRGMEKDYT WDKAALEYEQ VFKWAFIDPP YVS

Best Arabidopsis Sequence Match ( AT5G24300.2 )
(BLAST)

001: MASLQISGSV KFEPFVGFNR IRHFRPIASL GFPRFRRRFS IGRSLLLRRS SSFSGDSRES DEERFITDAE RDGSGSVLGF QLTPPGDQQT VSTSTGEITH
101: HEEKKEAIDQ IVMADFGVPG NRAVEEGAAE VGIPSGKAEV VNNLVFVTSE AAPYSKTGGL GDVCGSLPIA LAGRGHRVMV ISPRYLNGTA ADKNYARAKD
201: LGIRVTVNCF GGSQEVSFYH EYRDGVDWVF VDHKSYHRPG NPYGDSKGAF GDNQFRFTLL CHAACEAPLV LPLGGFTYGE KSLFLVNDWH AGLVPILLAA
301: KYRPYGVYKD ARSILIIHNL AHQGVEPAAT YTNLGLPSEW YGAVGWVFPT WARTHALDTG EAVNVLKGAI VTSDRIITVS QGYAWEITTV EGGYGLQDLL
401: SSRKSVINGI TNGINVDEWN PSTDEHIPFH YSADDVSEKI KCKMALQKEL GLPIRPECPM IGFIGRLDYQ KGIDLIQTAG PDLMVDDIQF VMLGSGDPKY
501: ESWMRSMEET YRDKFRGWVG FNVPISHRIT AGCDILLMPS RFEPCGLNQL YAMRYGTIPV VHGTGGLRDT VENFNPYAEG GAGTGTGWVF TPLSKDSMVS
601: ALRLAAATYR EYKQSWEGLM RRGMTRNYSW ENAAVQYEQV FQWVFMDPPY VS

Arabidopsis Description

SS1Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QN76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.