Factsheet for VIT_15s0048g02600.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g02790.t01	Wine grape	plastid	74.76	75.87
KRH06370	Soybean	nucleus, plastid	74.76	74.15
KRH47803	Soybean	nucleus	74.59	73.99
Solyc08g083320.2.1	Tomato	plastid	70.85	72.26
PGSC0003DMT400031568	Potato	plastid	71.17	71.99
GSMUA_Achr1P06140_001	Banana	plastid	69.87	69.64
HORVU2Hr1G090980.3	Barley	plastid	66.94	69.31
EER98410	Sorghum	plastid	67.92	68.7
TraesCS2A01G373600.1	Wheat	plastid	66.45	68.11
TraesCS2D01G369800.1	Wheat	plastid	66.29	67.95
TraesCS2B01G390700.1	Wheat	plastid	66.29	67.95
Os07t0412100-01	Rice	plastid	67.26	67.93
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	67.43	67.21
Zm00001d019479_P004	Maize	plastid	66.78	65.5
GSMUA_Achr9P20780_001	Banana	plastid	65.31	65.31
HORVU7Hr1G012380.5	Barley	plastid	63.03	64.18
Zm00001d045462_P001	Maize	plastid	63.52	64.04
Zm00001d033937_P002	Maize	plastid	63.52	64.04
EER87785	Sorghum	plastid	63.35	63.98
Os06t0133000-02	Rice	plastid	63.19	63.71
TraesCS7A01G070100.1	Wheat	plastid	61.73	62.75
TraesCS4A01G418200.1	Wheat	plastid	61.73	62.64
TraesCS7D01G064300.1	Wheat	plastid	61.4	62.42
Zm00001d029360_P001	Maize	cytosol	24.43	60.0
GSMUA_Achr1P16610_001	Banana	plastid	29.15	58.69
Zm00001d033690_P001	Maize	cytosol, plastid	31.27	56.47
GSMUA_Achr1P16620_001	Banana	cytosol	20.52	56.25
Zm00001d027242_P002	Maize	plastid	43.97	46.08
VIT_16s0098g01780.t01	Wine grape	plastid	34.04	33.02
VIT_14s0108g00940.t01	Wine grape	plastid	36.32	27.88
VIT_11s0065g00150.t01	Wine grape	plastid	22.48	22.81
VIT_07s0205g00090.t01	Wine grape	plastid	6.19	17.35
VIT_10s0003g02880.t01	Wine grape	plastid	26.06	15.83
VIT_07s0205g00110.t01	Wine grape	cytosol, nucleus	12.21	15.43
VIT_10s0116g01730.t01	Wine grape	plastid	25.08	10.08

Protein Annotations

KEGG:00500+2.4.1.21	EntrezGene:100243677	wikigene:100243677	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	ProteinID:CBI38710
ProteinID:CBI38710.3	UniProt:D7U828	EMBL:FN596739	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009011	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1
EntrezGene:LOC100243677	wikigene:LOC100243677	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526
PANTHER:PTHR12526:SF383	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGR:TC66928	TIGRFAMs:TIGR02095	UniParc:UPI00015CDB74
ArrayExpress:VIT_15s0048g02600	EnsemblPlantsGene:VIT_15s0048g02600	EnsemblPlants:VIT_15s0048g02600.t01	RefSeq:XP_002273608	RefSeq:XP_002273608.1	SEG:seg

Description

Starch synthase, chloroplastic/amyloplastic [Source:UniProtKB/TrEMBL;Acc:D7U828]

Coordinates

chr15:+:16729965..16734102

Molecular Weight (calculated)

67387.5 Da

IEP (calculated)

8.782

GRAVY (calculated)

-0.144

Length

614 amino acids

Sequence
(BLAST)

001: MATVTASNFL PRSSNGNCGA TCRIEKKATL TKLRPKIQIL AHNGLRALNS VDELHQRTTI KVTRKGSRKG FKNENPRPWG GIICGCGMSL IFVGTEVGPW
101: SKTGGLGDVL GGLPPAMSAN GHRVMTVSPR FDQYKDAWDT GVTVQLNVGD RFEKVRFFHC YKRGVDRVFV DHPWFLEKVW GKTGSKLYGP LAGEDFQDNQ
201: LRFSLLCQAA LEAPRILNLK SSKYFSGPYG EDVVFIANDW HTAPLACYLK TMYRLKGRYG NAKVVFCIHN IAYQGRFAFA DFSLLNLPDE FKSSFDFTDG
301: YEKPVKGRKI NWMKAGILEA DKVLTVSPYY AKELVSGVEK GVELDNILRR TGITGIINGM DVQEWNPLTD KYISIKYDAS TVKEAKLLLK EALQAEAGLP
401: VDRNIPVIGF IGRLEEQKGS DILVAAIPQF VTANVQIIVL GTGKKPMEKQ LEQLEKKYPD NARGVAKFNV PLAHMIIAGA DFLLVPSRFE PCGLIQLHAM
501: RYGTVPIVAS TGGLVDTVKE GFTGFQMGSF SVECDAVDPA DATAVATSVK RALATYGTPA LTEMVQNCMA QDLSWKGPAK KWEEVLLSLG VPGSEPGIDG
601: EEIAPLSKEN VATP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.