Factsheet for GSMUA_Achr1P08190_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P06140_001	Banana	plastid	82.14	82.14
GSMUA_Achr9P20780_001	Banana	plastid	79.06	79.32
GSMUA_Achr1P16620_001	Banana	cytosol	26.14	71.88
GSMUA_Achr1P16610_001	Banana	plastid	35.06	70.82
Solyc08g083320.2.1	Tomato	plastid	67.05	68.6
PGSC0003DMT400031568	Potato	plastid	66.88	67.87
HORVU7Hr1G012380.5	Barley	plastid	66.4	67.83
Os06t0133000-02	Rice	plastid	67.05	67.82
VIT_02s0025g02790.t01	Wine grape	plastid	66.4	67.6
VIT_15s0048g02600.t01	Wine grape	plastid	67.21	67.43
Zm00001d045462_P001	Maize	plastid	66.4	67.16
Zm00001d033937_P002	Maize	plastid	66.4	67.16
EER87785	Sorghum	plastid	66.23	67.11
KRG92546	Soybean	plastid	65.42	66.61
TraesCS4A01G418200.1	Wheat	plastid	65.42	66.61
TraesCS7A01G070100.1	Wheat	plastid	64.94	66.23
KRH34245	Soybean	plastid	65.26	66.12
TraesCS7D01G064300.1	Wheat	plastid	64.61	65.89
CDY71840	Canola	plastid	32.14	65.56
AT1G32900.1	Thale cress	plastid	64.77	65.41
KRH47803	Soybean	nucleus	65.42	65.11
KRH06370	Soybean	nucleus, plastid	65.42	65.11
CDX73274	Canola	plastid	34.58	55.76
Bra010189.1-P	Field mustard	nucleus	65.1	54.78
GSMUA_Achr8P24090_001	Banana	cytosol	19.32	39.53
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plastid	12.99	34.33
GSMUA_Achr1P24640_001	Banana	cytosol	9.74	30.3
GSMUA_Achr6P23190_001	Banana	cytosol	33.93	28.71
GSMUA_Achr3P03290_001	Banana	plastid	31.49	28.08
GSMUA_Achr4P10220_001	Banana	plastid	35.39	28.02
GSMUA_Achr1P24650_001	Banana	mitochondrion	35.06	27.41
GSMUA_Achr3P16350_001	Banana	endoplasmic reticulum, vacuole	9.42	26.24
GSMUA_Achr8P27560_001	Banana	plastid	27.11	17.77
GSMUA_Achr3P16340_001	Banana	plastid	17.69	14.87
GSMUA_Achr5P00700_001	Banana	plastid	24.35	13.39
GSMUA_Achr11P...	Banana	plastid	11.04	6.69

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	EnsemblPlantsGene:GSMUA_Achr1G08190_001	EnsemblPlants:GSMUA_Achr1P08190_001
EnsemblPlants:GSMUA_Achr1T08190_001	InterPro:Glyco_trans_1	UniProt:M0RY27	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323
PANTHER:PTHR12526	PANTHER:PTHR12526:SF452	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI0002964EE5
SEG:seg	:	:	:	:	:

Description

Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:GMGC_GENE;Acc:GSMUA_Achr1G08190_001]

Coordinates

chr1:+:6312729..6317784

Molecular Weight (calculated)

68009.9 Da

IEP (calculated)

7.235

GRAVY (calculated)

-0.175

Length

616 amino acids

Sequence
(BLAST)

001: MAAVTKSQFI SKGSCAGYGG VVDSEPRTFL NRRVLHLRNQ TTAYEGLRSR NVVDLIQMPS NAKVISRKTV RGTQNPSRRP WAVVICGKGM NIVFVGAEMA
101: PWSKTGGLGD VLGGLPPAMA ANGHRVMTIA PRYDQYKDGW DTNVLAELKV GNEIERVRFF HCYKRGVDRV FIDHPLFLEK VWGKTGGMIY GPVTGTDYED
201: NQLRFSLLCQ AALEAPRILD LNNSRYYSGP YGEDVVFVAN DWHTGPLPCY LKSMYQSHGI YKNARVAFCI HNISYQGRFA FSDFALLNLP DKFKSSFDFT
301: DGSNRPVKGR KINWMKAGII ESDRVVTVSP YYAQELVSGV ERGVELENAL RMTGITGIVN GMDTNEWNPS IDKYISVNYD ATNVMDAKPL NKEALQAELG
401: LPVDRNIPVI AFIGRLEEQK GSDILAAAIP EFIDENVQVI VLGTGKKLLE RQLAQLEDMF PNKVRAHMKF NAPLAHEIMA GADLLALTSR FEPCGLIQLQ
501: GMRYGIPPMC ATTGGLADTV IEGITGFHMG PFNPDCDVVD KDDVQKVIQT VKRALKVYGT PAFAEMIQNC MTQDLSWKGP AKKWEQFLLS LGAAGSEAGI
601: DADEIAPLAK ENVATP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.