Factsheet for GSMUA_Achr8P27560_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P16350_001	Banana	endoplasmic reticulum, vacuole	20.32	86.43
GSMUA_Achr3P16340_001	Banana	plastid	58.51	75.03
TraesCS1A01G353300.1	Wheat	cytosol	48.51	66.47
VIT_10s0003g02880.t01	Wine grape	plastid	63.83	59.35
KRH58438	Soybean	nucleus	62.13	59.05
Os05t0533600-02	Rice	plastid	57.13	58.43
KRH42312	Soybean	nucleus	61.06	57.98
Solyc02g071040.2.1	Tomato	nucleus	61.38	57.64
PGSC0003DMT400021444	Potato	plastid	61.38	57.64
OQU78343	Sorghum	plastid	55.32	57.21
TraesCS1D01G356900.1	Wheat	plastid	54.57	56.19
Zm00001d010821_P002	Maize	plastid	54.04	55.89
TraesCS1B01G368500.1	Wheat	plastid	54.26	55.86
Bra021017.1-P	Field mustard	plastid	60.21	55.49
CDX76534	Canola	plastid	60.21	55.49
CDY08902	Canola	plastid	60.0	55.29
AT4G18240.1	Thale cress	plastid	60.32	54.52
HORVU1Hr1G080950.5	Barley	plastid	55.0	54.08
Os01t0720600-01	Rice	plastid	54.79	52.82
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plastid	11.91	48.07
GSMUA_Achr8P24090_001	Banana	cytosol	11.28	35.22
GSMUA_Achr1P06140_001	Banana	plastid	17.98	27.44
GSMUA_Achr1P16620_001	Banana	cytosol	6.49	27.23
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	17.77	27.11
GSMUA_Achr9P20780_001	Banana	plastid	17.23	26.38
GSMUA_Achr3P03290_001	Banana	plastid	18.94	25.76
GSMUA_Achr4P10220_001	Banana	plastid	19.26	23.26
GSMUA_Achr6P23190_001	Banana	cytosol	17.66	22.8
GSMUA_Achr1P24650_001	Banana	mitochondrion	19.04	22.72
GSMUA_Achr1P16610_001	Banana	plastid	7.34	22.62
GSMUA_Achr1P24640_001	Banana	cytosol	4.68	22.22
GSMUA_Achr5P00700_001	Banana	plastid	26.38	22.14
GSMUA_Achr11P...	Banana	plastid	14.47	13.37

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.4	Gene3D:3.40.50.2000	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	EnsemblPlantsGene:GSMUA_Achr8G27560_001
EnsemblPlants:GSMUA_Achr8P27560_001	EnsemblPlants:GSMUA_Achr8T27560_001	InterPro:Glyco_trans_1	UniProt:M0TU59	HAMAP:MF_00484	PFAM:PF00534
PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF341	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095
UniParc:UPI000296F443	SEG:seg	:	:	:	:

Description

Putative Glycogen synthase [Source:GMGC_GENE;Acc:GSMUA_Achr8G27560_001]

Coordinates

chr8:-:30680117..30692061

Molecular Weight (calculated)

106593.0 Da

IEP (calculated)

5.732

GRAVY (calculated)

-0.430

Length

940 amino acids

Sequence
(BLAST)

001: MASVASYLVL GRGFSCAKTP TRPPIACLRL SRAVSCKMRN RHLSSQQKRQ QFKRAPTERL SLNMNAQSHD NIGCEPEEAS SAGVSHSSQI TIPSNDAESD
101: SNSETDVAVS SFEETNMVIE NNDEQEHPSI HLEDLIATIR NAEKIEELEK ILSEKEALQA EINNLEMKLA ETDARIKVAA QEKINAELLE NQLEKLKTEI
201: SSRNSIEEGK HGTLDDESPL VLELNDLRKE NALLKDDIQM LKLKLADVSK TEEPLLDKVE NLQALFNDAS RVMDQPSLGL QQYHELQKKV DKIEALVTEA
301: TVSKFPSENF HHYDETLREK IELLEKQLWE SDQEMHSQIQ LFQESVREFH DALERLKEEI KKRSQELSLE NLPQEFWSRL LLIIDGWLLE KKISVNDAKL
401: LREMTWKKDA QIRDAYLASR SKSEHEKLAT FLKLTYSRTS PGMHIIHIAA EMAPVAKVGG LGDVISGLGK ALQRKGHLVE IVLPKYDCMQ YDLITDMKAL
501: DVVVESYFDG QLFRNKIWVG IIEGLPVYFI EPHHPAKFFW RGKYYGEYDD FKRFSFFSRA AVELLYQAGK KPDIIHCHDW QTAFVAPLYW DIYAAKGFNS
601: ARICFTCHNF EYQGTAPASE LASCGLDVHQ LNRPDRMRDH SADDKVNTVK GAIVFSNIVT TVSPTYSQEV RTVEGGRGLH ETLKSHSKKF IGILNGIDTD
701: AWNPSTDNYI SVQYSADDLQ GKAENKDAIR KCLKLSGSEG SQPLVGCITR LVPQKGVHLI RHAIYCALEL GGQFVLLGSS PVPHIQREFE DIANHFQSHS
801: HVRLLLKYDD ALSHLIYAAS DMFIIPSMFE PCGLTQMIAM RYGSVPIVRK TGGLNDSVFD VDDNTIPEQY QNGFTFVAPD EQGLSSAMER AFQHYIRSPE
901: SWQQLVQKDM RLDFSWDSSA SQYEELYERS VARARAAARV

Best Arabidopsis Sequence Match ( AT4G18240.1 )
(BLAST)

0001: MTTKLSSFCF LTHGLAGISC EREHGSSRRF FYLPSRRLVS TSCKMRQQRG FDSSKRQEVK KGSPKPILSI NSGLQSNNDE ESDLENGSAD SVPSLKSDAE
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT

Arabidopsis Description

SS4Probable starch synthase 4, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WVX5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.