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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:cytosol
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX76534 Canola plastid 86.63 88.33
Bra021017.1-P Field mustard plastid 86.15 87.84
CDY08902 Canola plastid 85.96 87.65
GSMUA_Achr3P16350_001 Banana endoplasmic reticulum, vacuole 15.58 73.3
VIT_10s0003g02880.t01 Wine grape plastid 66.06 67.95
KRH58438 Soybean nucleus 63.56 66.84
KRH42312 Soybean nucleus 63.27 66.46
TraesCS1A01G353300.1 Wheat cytosol 42.5 64.43
Solyc02g071040.2.1 Tomato nucleus 61.25 63.64
PGSC0003DMT400021444 Potato plastid 61.15 63.54
GSMUA_Achr8P27560_001 Banana plastid 54.52 60.32
OQU78343 Sorghum plastid 48.85 55.89
GSMUA_Achr3P16340_001 Banana plastid 39.33 55.8
TraesCS1B01G368500.1 Wheat plastid 48.85 55.64
TraesCS1D01G356900.1 Wheat plastid 48.85 55.64
Os05t0533600-02 Rice plastid 49.04 55.5
Zm00001d010821_P002 Maize plastid 48.37 55.34
HORVU1Hr1G080950.5 Barley plastid 49.23 53.56
Os01t0720600-01 Rice plastid 48.37 51.59
AT5G65685.5 Thale cress extracellular, golgi 13.94 28.71
AT1G32900.1 Thale cress plastid 16.25 27.7
AT1G11720.2 Thale cress mitochondrion, plastid 27.02 25.69
AT5G24300.1 Thale cress plastid 15.77 25.15
AT3G01180.1 Thale cress plastid 17.69 23.23
Protein Annotations
KEGG:00500+2.4.1.21MapMan:3.2.2.4.4Gene3D:3.40.50.2000EntrezGene:827550UniProt:A0A068FPX2ProteinID:AEE84015.1
EMBL:AK226610ArrayExpress:AT4G18240EnsemblPlantsGene:AT4G18240RefSeq:AT4G18240TAIR:AT4G18240RefSeq:AT4G18240-TAIR-G
EnsemblPlants:AT4G18240.1TAIR:AT4G18240.1Symbol:ATSS4Unigene:At.46236ProteinID:CAA16796.1ProteinID:CAB78826.1
ncoils:CoilGO:GO:0003674GO:GO:0003824GO:GO:0004373GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005975GO:GO:0005982
GO:GO:0008150GO:GO:0008152GO:GO:0009011GO:GO:0009058GO:GO:0009501GO:GO:0009507
GO:GO:0009536GO:GO:0009987GO:GO:0016740GO:GO:0016757GO:GO:0019252GO:GO:0033201
InterPro:GS/SSInterPro:Glyco_trans_1EMBL:KJ676990HAMAP:MF_00484RefSeq:NP_193558.3PFAM:PF00534
PFAM:PF08323PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009001PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS51257PANTHER:PTHR12526PANTHER:PTHR12526:SF341
UniProt:Q0WVX5SUPFAM:SSF53756InterPro:Starch_synth_cat_domTIGRFAMs:TIGR02095UniParc:UPI000034F0B0SEG:seg
Description
SS4Probable starch synthase 4, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WVX5]
Coordinates
chr4:+:10082108..10087203
Molecular Weight (calculated)
117754.0 Da
IEP (calculated)
5.799
GRAVY (calculated)
-0.525
Length
1040 amino acids
Sequence
(BLAST)
0001: MTTKLSSFCF LTHGLAGISC EREHGSSRRF FYLPSRRLVS TSCKMRQQRG FDSSKRQEVK KGSPKPILSI NSGLQSNNDE ESDLENGSAD SVPSLKSDAE
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.