Factsheet for Bra021017.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76534	Canola	plastid	98.92	98.92
AT4G18240.1	Thale cress	plastid	87.84	86.15
GSMUA_Achr3P16350_001	Banana	endoplasmic reticulum, vacuole	15.98	73.76
VIT_10s0003g02880.t01	Wine grape	plastid	66.76	67.36
KRH58438	Soybean	nucleus	64.12	66.13
KRH42312	Soybean	nucleus	64.02	65.96
TraesCS1A01G353300.1	Wheat	cytosol	43.43	64.58
Solyc02g071040.2.1	Tomato	nucleus	61.96	63.14
PGSC0003DMT400021444	Potato	plastid	61.96	63.14
GSMUA_Achr8P27560_001	Banana	plastid	55.49	60.21
GSMUA_Achr3P16340_001	Banana	plastid	40.49	56.34
OQU78343	Sorghum	plastid	49.9	56.0
TraesCS1B01G368500.1	Wheat	plastid	50.1	55.97
TraesCS1D01G356900.1	Wheat	plastid	49.71	55.53
Os05t0533600-02	Rice	plastid	49.9	55.39
Zm00001d010821_P002	Maize	plastid	49.12	55.12
HORVU1Hr1G080950.5	Barley	plastid	50.2	53.56
Os01t0720600-01	Rice	plastid	49.02	51.28
Bra019836.1-P	Field mustard	endoplasmic reticulum, vacuole	16.86	34.33
Bra024412.1-P	Field mustard	plastid	17.16	29.51
Bra009747.1-P	Field mustard	plastid	16.76	26.27
Bra010189.1-P	Field mustard	nucleus	16.47	22.95
Bra039138.1-P	Field mustard	plastid	17.25	22.83
Bra021486.1-P	Field mustard	endoplasmic reticulum	4.51	21.8
Bra016818.1-P	Field mustard	cytosol	28.04	21.78
Bra021487.1-P	Field mustard	cytosol	7.45	20.49

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.4	Gene3D:3.40.50.2000	EnsemblPlantsGene:Bra021017	EnsemblPlants:Bra021017.1	EnsemblPlants:Bra021017.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005982	GO:GO:0008150	GO:GO:0008152
GO:GO:0009011	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	InterPro:GS/SS
InterPro:Glyco_trans_1	UniProt:M4DWX1	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PFscan:PS51257
PANTHER:PTHR12526	PANTHER:PTHR12526:SF341	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI0002547287
SEG:seg	:	:	:	:	:

Description

AT4G18240 (E=0.0) ATSS4, SSIV, SS4 | ATSS4; transferase, transferring glycosyl groups

Coordinates

chrA08:+:10463978..10468785

Molecular Weight (calculated)

115743.0 Da

IEP (calculated)

5.579

GRAVY (calculated)

-0.553

Length

1020 amino acids

Sequence
(BLAST)

0001: MTTTKLSSCF LTNGLVGISC KREHGGSPRF FYLPSRRLLP ASCKIRQQRG FDSNKRQDIK KGSPEPIIPI NSSLQSNSDE EDSQPDNGSA DTIHSTVETN
0101: RVDSSTENRD GDVQKSEVTR LKNKHTKKKE SDGQDLNVLT VPEVAKALSI NKSGGEQFSD GQFGELMTMI RNAEQNILRL DQARVSALAE LSKILSEKEA
0201: LQGEINVLEM KLAETDERIK TAAQEKVRVE LLEEQLEKLR QDMVSPPPES DGYVLALSNE IETLRIENLS LRNDIETLKS KLESVENTDE RVVVLEKECS
0301: GLESSVKDLE SKLLVSQEDV SKLSSLKTEC SDLWTKVESL QMLLDRATKQ AEQAVLVLQQ NQDLKSKVEK IEESLKEANV YKESSEKIQQ YNELMQHKVE
0401: LLEERLEKSD AEIFSYVQLY QESIKEFQET LMRLKEESNR KEPRDEPVDD MPWDYWSRLL LTVDGWLLEK KIANDDADSL REMVWKKDRR IHDTYIDVKD
0501: KSEREAISAF LKLVSSPTSQ GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRRGHLVEI ILPKYDCMQY DRVRDLRALD TVVESYFDGK LYKNKIWIGT
0601: VEGLPVHFIE PQHPSKFFWR GQFYGEKDDF KRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA RICFTCHNFE YQGTSSASDL
0701: GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TSEGGKGLHS TLNSNSKKFI GILNGIDTDS WNPATDPFLK AQFNAKDLQG
0801: KEENKYALRK QLGLSSAEPR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH VRLLLKYDEA LSHSIYAASD
0901: MFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGLNYALERA FNHYKKDEEK WMRLMEKVMS IDFSWASSAT
1001: QYEELYTRSV ARARASPNRT

Best Arabidopsis Sequence Match ( AT4G18240.1 )
(BLAST)

0001: MTTKLSSFCF LTHGLAGISC EREHGSSRRF FYLPSRRLVS TSCKMRQQRG FDSSKRQEVK KGSPKPILSI NSGLQSNNDE ESDLENGSAD SVPSLKSDAE
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT

Arabidopsis Description

SS4Probable starch synthase 4, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WVX5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.