Factsheet for Bra021487.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006216.1-P
Bra008801.1-P
Bra017974.1-P
Bra018126.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	Bra018126.1-P	AT3G47620.1	21798944
AT3G01180.1	Bra017974.1-P	AT3G49580.1	21798944
AT3G01180.1	Bra006216.1-P	AT5G13810.1	21798944
AT3G01180.1	Bra008801.1-P	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34693	Canola	endoplasmic reticulum, golgi	92.45	86.18
AT3G01180.1	Thale cress	plastid	67.92	31.82
Bra039138.1-P	Field mustard	plastid	64.42	31.0
GSMUA_Achr1P24640_001	Banana	cytosol	13.21	24.75
Bra021486.1-P	Field mustard	endoplasmic reticulum	13.75	24.17
Solyc02g088000.2.1	Tomato	nucleus, plastid	49.6	23.96
PGSC0003DMT400003356	Potato	cytosol	49.33	23.86
VIT_14s0108g00940.t01	Wine grape	plastid	50.67	23.5
Os02t0744700-01	Rice	nucleus	41.78	22.9
EES05532	Sorghum	plastid	43.4	22.87
OQU91730	Sorghum	cytosol	41.51	22.51
TraesCS6D01G287000.1	Wheat	plastid	40.16	22.47
Zm00001d052263_P001	Maize	plastid	41.78	22.14
TraesCS6B01G336400.1	Wheat	plastid	40.16	22.11
Zm00001d018033_P001	Maize	plastid	40.97	22.09
HORVU6Hr1G075950.4	Barley	plastid	40.16	22.07
TraesCS6A01G307800.1	Wheat	plastid	40.16	22.04
KXG19644	Sorghum	plastid	43.13	20.78
TraesCS7A01G189000.1	Wheat	plastid	44.2	20.6
TraesCS7B01G093800.2	Wheat	plastid	44.2	20.55
Zm00001d037234_P005	Maize	plastid	41.78	20.53
TraesCS7D01G190100.1	Wheat	plastid	44.2	20.53
Os10t0437600-00	Rice	plastid	40.43	20.03
Os06t0229800-01	Rice	plastid	42.32	19.38
TraesCS1B01G155700.3	Wheat	plastid	38.81	19.38
TraesCS1A01G137200.1	Wheat	plastid	39.08	19.31
TraesCS1D01G138100.2	Wheat	plastid	38.81	19.17
Zm00001d014150_P005	Maize	plastid	39.89	19.12
HORVU7Hr1G038420.1	Barley	plastid	43.94	19.04
HORVU1Hr1G035960.19	Barley	cytosol, plastid	38.27	17.68
Bra009747.1-P	Field mustard	plastid	23.72	13.52
Bra010189.1-P	Field mustard	nucleus	22.64	11.48
Bra021017.1-P	Field mustard	plastid	20.49	7.45
Bra024412.1-P	Field mustard	plastid	11.59	7.25
Bra019836.1-P	Field mustard	endoplasmic reticulum, vacuole	8.36	6.19
Bra016818.1-P	Field mustard	cytosol	16.44	4.65

Protein Annotations

EnsemblPlants:Bra021487.1	EnsemblPlants:Bra021487.1-P	EnsemblPlantsGene:Bra021487	Gene3D:3.40.50.2000	InterPro:Starch_synth_cat_dom	KEGG:00500+2.4.1.21
PANTHER:PTHR12526	PANTHER:PTHR12526:SF371	PFAM:PF08323	SEG:seg	SUPFAM:SSF53756	UniParc:UPI000254473E
UniProt:M4DY91	MapMan:35.1	:	:	:	:

Description

AT3G01180 (E=1e-058) AtSS2 | AtSS2 (starch synthase 2); transferase, transferring glycosyl groups

Coordinates

chrA01:+:25018367..25020736

Molecular Weight (calculated)

40859.8 Da

IEP (calculated)

7.170

GRAVY (calculated)

-0.557

Length

371 amino acids

Sequence
(BLAST)

001: MKRKLVSSIK DTTPNLDHAK PSAKEDYGSS SSVSAIKKEE NGNASVSPSN YGKSFLNKLP EANKTSPLER SKQSSASVQS SSPSGVASSG KPWSSVVASS
101: VDPPYKPSSK QTSCDNPPHP LSSYLTKTPS IKTEEYMETK EEKTHEEEAS SDTNEPVRDE EKPSPLAEAN VMNVILVAAE CAPFSKTGGL GDVAGALPKA
201: LARLGHRVMV VVPRYAEYEE AKDVGVRKRY EVAGQDMEVM YFHGVDFVFI DSPVFRHLSN NIYGGNRLGR GPVHDFSYVD LPGHYLDSFK LYDPVGREHF
301: NIFAAGLKAA DRVHTVSHGY SWEVKTLEGG WGLHNIISEN DWKFRGIVKS FKIYRTSIEE FSINFSTNIK I

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.