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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • plastid 4
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:mitochondrion
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra019836.1-P Field mustard endoplasmic reticulum, vacuole 41.5 90.62
CDY49799 Canola mitochondrion 87.29 88.02
CDY31209 Canola plastid 85.28 87.03
CDX97980 Canola plastid 85.83 86.07
GSMUA_Achr11P... Banana cytosol, mitochondrion, plastid 16.82 78.97
Bra016818.1-P Field mustard cytosol 86.01 71.67
KRH51091 Soybean plastid 62.71 63.4
KRH20852 Soybean plastid 65.08 61.97
KRH11434 Soybean plastid 65.45 61.41
Solyc02g080570.2.1 Tomato nucleus, plastid 68.56 60.98
GSMUA_Achr5P00700_001 Banana plastid 57.68 56.34
KXG27148 Sorghum mitochondrion, plastid 57.95 53.23
Zm00001d002256_P012 Maize plastid 57.31 52.78
Os04t0624600-01 Rice plastid 58.41 52.55
Zm00001d026337_P013 Maize plastid 57.13 52.48
VIT_10s0116g01730.t01 Wine grape plastid 69.2 49.54
TraesCS2B01G491700.2 Wheat plastid 57.77 49.53
TraesCS2A01G468800.1 Wheat plastid 58.14 48.66
HORVU2Hr1G106410.9 Barley cytosol 58.5 48.16
TraesCS2D01G468900.2 Wheat endoplasmic reticulum, golgi 57.95 45.19
GSMUA_Achr11P... Banana plastid 41.41 44.54
Os08t0191433-01 Rice plastid 54.75 38.57
HORVU1Hr1G021590.5 Barley mitochondrion 55.3 37.98
TraesCS1B01G119300.1 Wheat plastid 55.85 37.95
TraesCS1D01G100100.1 Wheat cytosol 55.21 37.45
TraesCS1A01G091500.1 Wheat plastid 55.58 37.32
Zm00001d000002_P002 Maize plastid 55.58 36.26
KXG24650 Sorghum plastid 55.67 36.16
AT4G18240.1 Thale cress plastid 25.69 27.02
AT5G24300.1 Thale cress plastid 14.72 24.69
AT1G32900.1 Thale cress plastid 13.71 24.59
AT3G01180.1 Thale cress plastid 16.64 22.98
AT5G65685.5 Thale cress extracellular, golgi 8.04 17.43
Protein Annotations
KEGG:00500+2.4.1.21MapMan:3.2.2.4.3Gene3D:3.40.50.2000EntrezGene:837716UniProt:A0A178W4M9ProteinID:AEE28775.1
ArrayExpress:AT1G11720EnsemblPlantsGene:AT1G11720RefSeq:AT1G11720TAIR:AT1G11720RefSeq:AT1G11720-TAIR-GEnsemblPlants:AT1G11720.2
TAIR:AT1G11720.2Symbol:ATSS3Unigene:At.42115InterPro:CBM25ncoils:CoilUniProt:F4IAG1
GO:GO:0003674GO:GO:0003824GO:GO:0004373GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009011
GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0016740GO:GO:0019252
GO:GO:0030246GO:GO:2001070InterPro:GS/SSHAMAP:MF_00484RefSeq:NP_001184965.1ProteinID:OAP13116.1
PFAM:PF08323PFAM:PF16760PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009001PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281PANTHER:PTHR12526PANTHER:PTHR12526:SF341SMART:SM01066
Symbol:SS3SUPFAM:SSF53756InterPro:Starch_synth_cat_domUniParc:UPI0001E92BD3SEG:seg:
Description
ATSS3SS3 [Source:UniProtKB/TrEMBL;Acc:A0A178W4M9]
Coordinates
chr1:+:3951366..3957044
Molecular Weight (calculated)
124236.0 Da
IEP (calculated)
6.742
GRAVY (calculated)
-0.468
Length
1094 amino acids
Sequence
(BLAST)
0001: MEVCWQIQRP ASLRPGFQEK GRVKINTFSV GFFPRSISSI ASLESQYKSN GFLHQITASA DFSRKKQGRM AASGPKSSGP RGFGRRTTVG SAQKRTQKKN
0101: GEKDSNATST ATNEVSGISK LPAAKVDVQK QSSVVLNERN VLDRSDIEDG SDRLDKKTTD DDDLLEQKLK LERENLRRKE IETLAAENLA RGDRMFVYPV
0201: IVKPDEDIEV FLNRNLSTLN NEPDVLIMGA FNEWRWKSFT RRLEKTWIHE DWLSCLLHIP KEAYKMDFVF FNGQSVYDNN DSKDFCVEIK GGMDKVDFEN
0301: FLLEEKLREQ EKLAKEEAER ERQKEEKRRI EAQKAAIEAD RAQAKAETQK RRELLQPAIK KAVVSAENVW YIEPSDFKAE DTVKLYYNKR SGPLTNSKEL
0401: WLHGGFNNWV DGLSIVVKLV NAELKDVDPK SGNWWFAEVV VPGGALVIDW VFADGPPKGA FLYDNNGYQD FHALVPQKLP EELYWLEEEN MIFRKLQEDR
0501: RLKEEVMRAK MEKTARLKAE TKERTLKKFL LSQKDVVYTE PLEIQAGNPV TVLYNPANTV LNGKPEVWFR GSFNRWTHRL GPLPPQKMEA TDDESSHVKT
0601: TAKVPLDAYM MDFVFSEKED GGIFDNKNGL DYHLPVVGGI SKEPPLHIVH IAVEMAPIAK VGGLGDVVTS LSRAVQELNH NVDIVFPKYD CIKHNFVKDL
0701: QFNRSYHWGG TEIKVWHGKV EGLSVYFLDP QNGLFQRGCV YGCADDAGRF GFFCHAALEF LLQGGFHPDI LHCHDWSSAP VSWLFKDHYT QYGLIKTRIV
0801: FTIHNLEFGA NAIGKAMTFA DKATTVSPTY AKEVAGNSVI SAHLYKFHGI INGIDPDIWD PYNDNFIPVP YTSENVVEGK RAAKEELQNR LGLKSADFPV
0901: VGIITRLTHQ KGIHLIKHAI WRTLERNGQV VLLGSAPDPR IQNDFVNLAN QLHSSHGDRA RLVLTYDEPL SHLIYAGADF ILVPSIFEPC GLTQLIAMRY
1001: GAVPVVRKTG GLFDTVFDVD HDKERAQAQV LEPNGFSFDG ADAPGVDYAL NRAISAWYDG REWFNSLCKT VMEQDWSWNR PALEYLELYH SARK
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.