Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71840 | Canola | plastid | 42.79 | 86.42 |
| Bra010189.1-P | Field mustard | nucleus | 92.13 | 76.78 |
| CDX73274 | Canola | plastid | 45.74 | 73.04 |
| VIT_02s0025g02790.t01 | Wine grape | plastid | 71.97 | 72.56 |
| KRG92546 | Soybean | plastid | 69.67 | 70.25 |
| KRH34245 | Soybean | plastid | 69.51 | 69.74 |
| GSMUA_Achr1P06140_001 | Banana | plastid | 66.56 | 65.91 |
| GSMUA_Achr1P08190_001 | Banana | cytosol, plastid | 65.41 | 64.77 |
| HORVU2Hr1G090980.3 | Barley | plastid | 62.95 | 64.76 |
| GSMUA_Achr9P20780_001 | Banana | plastid | 64.75 | 64.33 |
| Os07t0412100-01 | Rice | plastid | 64.1 | 64.31 |
| EER98410 | Sorghum | plastid | 63.93 | 64.25 |
| TraesCS2D01G369800.1 | Wheat | plastid | 62.79 | 63.94 |
| TraesCS2B01G390700.1 | Wheat | plastid | 62.62 | 63.77 |
| TraesCS2A01G373600.1 | Wheat | plastid | 62.46 | 63.61 |
| Zm00001d045462_P001 | Maize | plastid | 62.62 | 62.73 |
| Zm00001d033937_P002 | Maize | plastid | 62.62 | 62.73 |
| Zm00001d019479_P004 | Maize | plastid | 64.1 | 62.46 |
| EER87785 | Sorghum | plastid | 62.13 | 62.34 |
| Os06t0133000-02 | Rice | plastid | 61.97 | 62.07 |
| HORVU7Hr1G012380.5 | Barley | plastid | 61.15 | 61.86 |
| GSMUA_Achr1P16610_001 | Banana | plastid | 30.66 | 61.31 |
| TraesCS7D01G064300.1 | Wheat | plastid | 60.49 | 61.09 |
| TraesCS4A01G418200.1 | Wheat | plastid | 60.49 | 60.99 |
| TraesCS7A01G070100.1 | Wheat | plastid | 60.0 | 60.6 |
| Zm00001d029360_P001 | Maize | cytosol | 22.79 | 55.6 |
| Zm00001d033690_P001 | Maize | cytosol, plastid | 30.82 | 55.29 |
| GSMUA_Achr1P16620_001 | Banana | cytosol | 19.84 | 54.02 |
| Zm00001d027242_P002 | Maize | plastid | 41.48 | 43.17 |
| AT5G24300.1 | Thale cress | plastid | 35.25 | 32.98 |
| AT3G01180.1 | Thale cress | plastid | 36.07 | 27.78 |
| AT4G18240.1 | Thale cress | plastid | 27.7 | 16.25 |
| AT1G11720.2 | Thale cress | mitochondrion, plastid | 24.59 | 13.71 |
| AT5G65685.5 | Thale cress | extracellular, golgi | 9.34 | 11.29 |
Protein Annotations
| KEGG:00500+2.4.1.21 | MapMan:3.2.2.4.5 | Gene3D:3.40.50.2000 | EntrezGene:840184 | UniProt:A0A178WEV8 | ProteinID:AAF31273.1 |
| ProteinID:AEE31537.1 | ArrayExpress:AT1G32900 | EnsemblPlantsGene:AT1G32900 | RefSeq:AT1G32900 | TAIR:AT1G32900 | RefSeq:AT1G32900-TAIR-G |
| EnsemblPlants:AT1G32900.1 | TAIR:AT1G32900.1 | EMBL:AY088544 | EMBL:AY094405 | EMBL:AY123983 | EMBL:AY149948 |
| Unigene:At.11953 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004373 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005975 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009011 | GO:GO:0009058 | GO:GO:0009501 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009569 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016757 | GO:GO:0019252 | GO:GO:0033840 |
| GO:GO:0102502 | InterPro:GS/SS | InterPro:Glyco_trans_1 | EMBL:KJ138976 | HAMAP:MF_00484 | RefSeq:NP_174566.1 |
| ProteinID:OAP16967.1 | PFAM:PF00534 | PFAM:PF08323 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR12526 | PANTHER:PTHR12526:SF383 | UniProt:Q9MAQ0 | SUPFAM:SSF53756 |
| InterPro:Starch_synth_cat_dom | TIGRFAMs:TIGR02095 | UniParc:UPI0000048322 | UniProt:W8PW06 | SEG:seg | : |
Description
GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
Coordinates
chr1:-:11920390..11923866
Molecular Weight (calculated)
66883.1 Da
IEP (calculated)
8.700
GRAVY (calculated)
-0.023
Length
610 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.