Factsheet for Zm00001d027242_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029360_P001	Maize	cytosol	27.65	64.8
Zm00001d033690_P001	Maize	cytosol, plastid	34.81	60.0
Zm00001d019479_P004	Maize	plastid	57.85	54.15
HORVU2Hr1G090980.3	Barley	plastid	52.39	51.77
TraesCS2D01G369800.1	Wheat	plastid	52.56	51.42
TraesCS2A01G373600.1	Wheat	plastid	52.56	51.42
TraesCS2B01G390700.1	Wheat	plastid	51.88	50.75
Os07t0412100-01	Rice	plastid	52.56	50.66
VIT_15s0048g02600.t01	Wine grape	plastid	46.08	43.97
Solyc08g083320.2.1	Tomato	plastid	45.05	43.85
PGSC0003DMT400031568	Potato	plastid	44.88	43.33
KRH06370	Soybean	nucleus, plastid	45.73	43.3
KRH47803	Soybean	nucleus	45.56	43.13
VIT_02s0025g02790.t01	Wine grape	plastid	44.37	42.98
KRG92546	Soybean	plastid	43.69	42.31
AT1G32900.1	Thale cress	plastid	43.17	41.48
KRH34245	Soybean	plastid	43.0	41.45
Zm00001d033937_P002	Maize	plastid	40.1	38.59
Zm00001d045462_P001	Maize	plastid	40.1	38.59
Bra010189.1-P	Field mustard	nucleus	44.37	35.52
CDY71840	Canola	plastid	14.33	27.81
CDX73274	Canola	plastid	16.72	25.65
Zm00001d045261_P006	Maize	plastid	20.31	21.25
Zm00001d052263_P001	Maize	plastid	23.04	19.29
Zm00001d018033_P001	Maize	plastid	22.53	19.19
Zm00001d014150_P005	Maize	plastid	24.91	18.86
Zm00001d037234_P005	Maize	plastid	22.53	17.48
Zm00001d010821_P002	Maize	plastid	19.62	12.65
Zm00001d051976_P002	Maize	plastid	9.56	10.69
Zm00001d002256_P012	Maize	plastid	18.26	9.01
Zm00001d026337_P013	Maize	plastid	18.26	8.98
Zm00001d000002_P002	Maize	plastid	18.09	6.32

Protein Annotations

EnsemblPlants:Zm00001d027242_P002	EnsemblPlants:Zm00001d027242_T002	EnsemblPlantsGene:Zm00001d027242	Gene3D:3.40.50.2000	InterPro:Starch_synth_cat_dom	KEGG:00500+2.4.1.21
ncoils:Coil	PANTHER:PTHR12526	PANTHER:PTHR12526:SF383	PFAM:PF08323	ProteinID:ONL92428.1	SEG:seg
SUPFAM:SSF53756	UniParc:UPI0008449124	UniProt:A0A1D6JJ99	MapMan:35.1	:	:

Description

Granule-bound starch synthase 1 chloroplastic/amyloplastic

Coordinates

chr1:-:209979..215216

Molecular Weight (calculated)

64466.6 Da

IEP (calculated)

4.590

GRAVY (calculated)

-0.151

Length

586 amino acids

Sequence
(BLAST)

001: MLPFDSFLPS KPSTSDTATD HSSDSDFATT NSNEDTAILG MTGDGAFAIS FADRFTASAS AALFVEKRMV HGSKSMAVPE QGIPPNVVED GEPFRHTSVN
101: IDPSHTVSVP HGSVPEAPQS DSHVYSVDSN ANGNLILAIL DKLKEEREQQ EGKYGEEDVD GSCISEEEDG DWDVDEPDEE DIIYPLSNDW HTAILPCYLK
201: SMYKSNGIYK NAKVAFCIHN IAYQGRFARA DFDLLNLPDS FLPSFDFIDG HVKPVLGRKI NWMKTGIVES DLVLTVSPHY VKELTYGPDK GVELDGVLRT
301: KPLEIGIVNG MDVYEWDPST DKYTSVKYDA TTVTEAKALN KERLQAEVGL PVDSSIPVIV FVGRLEEQKG SDILIAAIPE FVGENVQIIV LVCFNLEVIS
401: ILSHDTVHNL IVAERKKIVL QGTGKKKMEE ELMQLEVKYP NIARGIAKFN VPLAHMMFAG SDFIIVPSRF EPCGLIQLQG MRVSSSLCYS SDLSARKINI
501: SSHLFLSCYI LIPVKQKVFP SVHHLEDLLT RLRRGVTGFH MGSFNVEGPA KKWEEVLLGL GVEGSQAGID DAEEIAPLAK ENVATP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.