Factsheet for Solyc08g083320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031568	Potato	plastid	98.5	97.69
VIT_15s0048g02600.t01	Wine grape	plastid	72.26	70.85
KRH47803	Soybean	nucleus	72.76	70.76
KRH06370	Soybean	nucleus, plastid	72.26	70.27
GSMUA_Achr1P06140_001	Banana	plastid	70.6	68.99
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	68.6	67.05
HORVU2Hr1G090980.3	Barley	plastid	65.61	66.61
EER98410	Sorghum	plastid	67.11	66.56
TraesCS2A01G373600.1	Wheat	plastid	65.95	66.28
Os07t0412100-01	Rice	plastid	66.78	66.12
TraesCS2D01G369800.1	Wheat	plastid	65.61	65.94
TraesCS2B01G390700.1	Wheat	plastid	65.61	65.94
GSMUA_Achr9P20780_001	Banana	plastid	66.61	65.31
Zm00001d019479_P004	Maize	plastid	66.94	64.38
EER87785	Sorghum	plastid	64.12	63.49
Zm00001d033937_P002	Maize	plastid	64.12	63.38
Zm00001d045462_P001	Maize	plastid	64.12	63.38
GSMUA_Achr1P16610_001	Banana	plastid	31.89	62.95
TraesCS4A01G418200.1	Wheat	plastid	63.12	62.81
TraesCS7D01G064300.1	Wheat	plastid	62.96	62.75
HORVU7Hr1G012380.5	Barley	plastid	62.79	62.69
Os06t0133000-02	Rice	plastid	62.96	62.23
TraesCS7A01G070100.1	Wheat	plastid	62.29	62.09
GSMUA_Achr1P16620_001	Banana	cytosol	21.1	56.7
Zm00001d029360_P001	Maize	cytosol	23.26	56.0
Zm00001d033690_P001	Maize	cytosol, plastid	31.4	55.59
Zm00001d027242_P002	Maize	plastid	43.85	45.05
Solyc03g083090.2.1	Tomato	plastid	35.55	33.39
Solyc02g088000.2.1	Tomato	nucleus, plastid	35.05	27.47
Solyc07g042830.2.1	Tomato	plastid	23.59	23.13
Solyc02g091770.1.1	Tomato	mitochondrion	9.63	19.21
Solyc02g071040.2.1	Tomato	nucleus	27.24	16.38
Solyc02g091760.1.1	Tomato	cytosol	4.32	13.9
Solyc02g080570.2.1	Tomato	nucleus, plastid	24.92	12.2

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009011	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1
UniProt:K4CPX6	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF383
SUPFAM:SSF53756	EnsemblPlantsGene:Solyc08g083320.2	EnsemblPlants:Solyc08g083320.2.1	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI000276ACF5
SEG:seg	:	:	:	:	:

Description

Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:Projected from Arabidopsis thaliana (AT1G32900) UniProtKB/Swiss-Prot;Acc:Q9MAQ0]

Coordinates

chr8:-:65815703..65819075

Molecular Weight (calculated)

66202.0 Da

IEP (calculated)

6.975

GRAVY (calculated)

-0.056

Length

602 amino acids

Sequence
(BLAST)

001: MASITASHFV SRSSNVQTSL DTKSTLSQIG LRNHTLTHNG LRAVNKLDGL QSRTNTKVTP KMRSTKSATI VCGKGMNLIF VGTEVGPWSK TGGLGDVLGG
101: LPPALAARGH RVMTISPRYD QYKDAWDTSV ALEVKVGDSI EIVRFFHCYK RGVDRVFVDH PMFLEKVWGK TGSKIYGPKA GLDYLDNELR FSLLCQAALE
201: APRVLNLNSS NYFSGPYGED VLFIANDWHT ALIPCYLKSM YQSRGIYLNA KVAFCIHNIA YQGRFSFSDF PLLNLPDEFR GSFDFIDGYE KPVKGRKINW
301: MKAGILESHR VVTVSPYYAQ ELVSAVDKGV ELDSVLRKTC ITGIVNGMDT QEWNPATDKY TDVKYDITTV MDAKPLLKEA LQAAVGLPVD KKIPLIGFIG
401: RLEEQKGSDI LVAAIHKFIE LDVQIVVLGT GKKEFEQEIE QLEVLYPNKA KGVAKFNVPL AHMITAGADF MLVPSRFEPC GLIQLHAMRY GTVPICASTG
501: GLVDTVKEGY TGFHMGAFNV ECDVVDPDDV LKIVTTVSRA LAVYGTLAFA EMIKNCMSEE LSWKEPAKKW ETLLLGLGAS GSEPGVEGEE IAPLAKENVA
601: TP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.