CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 24385303

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06370	Soybean	nucleus, plastid	97.42	97.42
VIT_15s0048g02600.t01	Wine grape	plastid	73.99	74.59
Solyc08g083320.2.1	Tomato	plastid	70.76	72.76
KRG92546	Soybean	plastid	70.76	72.4
PGSC0003DMT400031568	Potato	plastid	70.76	72.16
KRH34245	Soybean	plastid	70.76	72.04
Os07t0412100-01	Rice	plastid	67.69	68.91
GSMUA_Achr1P06140_001	Banana	plastid	67.69	68.02
HORVU2Hr1G090980.3	Barley	plastid	65.11	67.96
EER98410	Sorghum	plastid	66.07	67.38
TraesCS2D01G369800.1	Wheat	plastid	64.78	66.94
TraesCS2A01G373600.1	Wheat	plastid	64.78	66.94
TraesCS2B01G390700.1	Wheat	plastid	64.62	66.78
Zm00001d019479_P004	Maize	plastid	66.72	65.97
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	65.11	65.42
GSMUA_Achr9P20780_001	Banana	plastid	63.81	64.33
EER87785	Sorghum	plastid	62.36	63.49
Zm00001d033937_P002	Maize	plastid	62.36	63.38
Zm00001d045462_P001	Maize	plastid	62.36	63.38
HORVU7Hr1G012380.5	Barley	plastid	61.07	62.69
TraesCS4A01G418200.1	Wheat	plastid	61.07	62.48
TraesCS7D01G064300.1	Wheat	plastid	60.74	62.25
TraesCS7A01G070100.1	Wheat	plastid	60.58	62.09
Os06t0133000-02	Rice	plastid	60.1	61.08
GSMUA_Achr1P16610_001	Banana	plastid	28.59	58.03
Zm00001d029360_P001	Maize	cytosol	23.26	57.6
GSMUA_Achr1P16620_001	Banana	cytosol	20.68	57.14
Zm00001d033690_P001	Maize	cytosol, plastid	30.53	55.59
KRH01182	Soybean	cytosol	19.71	45.86
Zm00001d027242_P002	Maize	plastid	43.13	45.56
KRH53506	Soybean	plastid	32.63	31.86
KRH64431	Soybean	plastid	32.31	30.72
KRH18473	Soybean	plastid	36.83	29.38
KRG93537	Soybean	plastid	36.35	29.07
KRH16258	Soybean	extracellular	5.98	27.21
KRH15937	Soybean	plastid	5.65	26.92
KRH39530	Soybean	cytosol	10.02	22.55
KRH74428	Soybean	plastid	19.06	17.25
KRH58438	Soybean	nucleus	26.82	16.78
KRH42312	Soybean	nucleus	26.66	16.67
KRH51091	Soybean	plastid	26.49	15.16
KRH11434	Soybean	plastid	26.49	14.07
KRH20852	Soybean	plastid	26.01	14.01

Protein Annotations

KEGG:00500+2.4.1.21	EntrezGene:100037476	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	UniProt:A1YZE0	EMBL:ACUP02004163
EMBL:EF153101	EnsemblPlantsGene:GLYMA_07G049900	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009011	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1	EnsemblPlants:KRH47803
ProteinID:KRH47803	ProteinID:KRH47803.1	ProteinID:KRH47804.1	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323
PANTHER:PTHR12526	PANTHER:PTHR12526:SF383	MetaCyc:PWY-622	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095
UniParc:UPI0000EC7EC5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:4243258..4248040

Molecular Weight (calculated)

68067.0 Da

IEP (calculated)

7.073

GRAVY (calculated)

-0.118

Length

619 amino acids

Sequence
(BLAST)

001: MATLTASSNL VSRNSHVHHG PTTASYESKA VAMGLRSLKQ TNTHNGLRIL NPVDELLNRT PIKTNAVQAM RKGPQGKNAR PKGMITCGMT FIIIGTEVAP
101: WCKTGGLGDV LGGLPPALAG FGHRVMTIVP RYDQYKDAWD TSVVIEVKVG DRTEKVRFFH CYKRGVDRVF VDHPWFLEKV WGKTGQKLYG PTTGNDYEDN
201: QLRFSLFCQA ALEAPRVLSL NSSKYFSGPY GEDVIFVAND WHTALIPCYL KSMYQSRGIY TNARVVFCIH NIAYQGRFAF ADFSLLNLPD QFKSSFDFID
301: GHVKPVVGRK INWLKAGLIE SWFVITVSPN YAKELVSGPD KGVELDNIIR KIDDDGRLVG IVNGMDVQEW NPTTDKYIAV KYDVSTVLEA KALLKEALQA
401: EVGLPVDRNI PLIGFIGRLE EQKGSDILAE AIPQFIKQNV QLVALGTGKK QMEKQLEELE ISYPDKARGV AKFNVPLAHM IIAGADFILV PSRFEPCGLI
501: QLQAMRYGSV PIVASTGGLV DTVKEGFTGF QMGAFNVECD AVDPADVDAI SKTVKRALAV YGTPAFTEII KNCMAQDLSW KGPAKEWEEV LLSLGVPGSE
601: PGSDGEEIAP QAKENVATP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.