Factsheet for GSMUA_Achr9P20780_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P06140_001	Banana	plastid	80.46	80.19
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	79.32	79.06
GSMUA_Achr1P16610_001	Banana	plastid	34.85	70.16
GSMUA_Achr1P16620_001	Banana	cytosol	24.76	67.86
Solyc08g083320.2.1	Tomato	plastid	65.31	66.61
PGSC0003DMT400031568	Potato	plastid	65.8	66.56
HORVU7Hr1G012380.5	Barley	plastid	64.98	66.17
VIT_02s0025g02790.t01	Wine grape	plastid	64.66	65.62
CDY71840	Canola	plastid	32.25	65.56
KRG92546	Soybean	plastid	64.5	65.45
VIT_15s0048g02600.t01	Wine grape	plastid	65.31	65.31
TraesCS7A01G070100.1	Wheat	plastid	64.01	65.07
TraesCS7D01G064300.1	Wheat	plastid	63.84	64.9
Zm00001d045462_P001	Maize	plastid	64.33	64.86
Zm00001d033937_P002	Maize	plastid	64.33	64.86
TraesCS4A01G418200.1	Wheat	plastid	63.84	64.79
AT1G32900.1	Thale cress	plastid	64.33	64.75
EER87785	Sorghum	plastid	64.01	64.64
KRH34245	Soybean	plastid	63.52	64.14
Os06t0133000-02	Rice	plastid	63.52	64.04
KRH06370	Soybean	nucleus, plastid	64.5	63.97
KRH47803	Soybean	nucleus	64.33	63.81
CDX73274	Canola	plastid	34.69	55.76
Bra010189.1-P	Field mustard	nucleus	64.33	53.96
GSMUA_Achr8P24090_001	Banana	cytosol	18.57	37.87
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plastid	12.05	31.76
GSMUA_Achr1P24640_001	Banana	cytosol	9.93	30.81
GSMUA_Achr6P23190_001	Banana	cytosol	34.36	28.98
GSMUA_Achr4P10220_001	Banana	plastid	36.16	28.53
GSMUA_Achr3P03290_001	Banana	plastid	31.43	27.93
GSMUA_Achr1P24650_001	Banana	mitochondrion	34.53	26.9
GSMUA_Achr3P16350_001	Banana	endoplasmic reticulum, vacuole	8.79	24.43
GSMUA_Achr8P27560_001	Banana	plastid	26.38	17.23
GSMUA_Achr3P16340_001	Banana	plastid	17.59	14.73
GSMUA_Achr5P00700_001	Banana	plastid	23.13	12.68
GSMUA_Achr11P...	Banana	plastid	10.1	6.1

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	EnsemblPlantsGene:GSMUA_Achr9G20780_001
EnsemblPlants:GSMUA_Achr9P20780_001	EnsemblPlants:GSMUA_Achr9T20780_001	InterPro:Glyco_trans_1	UniProt:M0U237	HAMAP:MF_00484	PFAM:PF00534
PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF452	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095
UniParc:UPI000295B657	SEG:seg	:	:	:	:

Description

Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G20780_001]

Coordinates

chr9:-:25184686..25187922

Molecular Weight (calculated)

67720.5 Da

IEP (calculated)

7.925

GRAVY (calculated)

-0.231

Length

614 amino acids

Sequence
(BLAST)

001: MATVTVLHFS KGSCTSPGGF VDSEPRSFQS RRIPNSRNQI TAYKGLRSEN IVDSLRLQSN AKATSTQAKT ATRRASRRPL AVVVCGKGMN LVFVGAEMAP
101: WSKTGGLGDV LGGLPPAMAA NGHRVMTIAP RYDQYKDGWD TSVQVELKVG NRVETVRFFH CYKRGVDRVF VDHPMFLAKV WGKTGGKIYG PATGTDYEDN
201: QQRFSLFCQA ALEAPRVLHL NNSEYYSGPY GEDVVFIAND WHTGLLPCYL KSMHRSRGLY RNAKVALCIH NIVYQGRFAL SDFALLNLPD EFKSSLDFTD
301: GYDEPVKGRK INWMKAGIIE SDRVVTVSPH YALELVGEET GVELDGVLRM TGVTGIVNGM DVNEWNPSTD KYISTNYDTA TVMDAKPLNK EALQAEVGLP
401: VDRNIPVVAF LGRLEEQKGS DIFAKAIPEF MDENVQVIVL GTGKKKLERQ LAELEDMFPD KLRAHLKFNV PMAHAIMGGA DLLAVTSRFE PCGLIQLQGM
501: RYGIPAVCST TGGLVDTVKE GITGFHMGRF SANCNVVDKE DIEKVVKTVK RAINVYRTPA FAQMIQNCMK QDLSWKGPAK KWEQFLMSLG ATGSEPGIDG
601: EEIAPLAMEN MATP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.