Factsheet for PGSC0003DMT400031568

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g083320.2.1	Tomato	plastid	97.69	98.5
VIT_15s0048g02600.t01	Wine grape	plastid	71.99	71.17
KRH47803	Soybean	nucleus	72.16	70.76
KRH06370	Soybean	nucleus, plastid	71.5	70.11
GSMUA_Achr1P06140_001	Banana	plastid	70.51	69.48
EER98410	Sorghum	plastid	67.22	67.22
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	67.87	66.88
HORVU2Hr1G090980.3	Barley	plastid	65.24	66.78
TraesCS2A01G373600.1	Wheat	plastid	65.57	66.44
Os07t0412100-01	Rice	plastid	66.39	66.28
TraesCS2D01G369800.1	Wheat	plastid	65.24	66.11
TraesCS2B01G390700.1	Wheat	plastid	65.24	66.11
GSMUA_Achr9P20780_001	Banana	plastid	66.56	65.8
Zm00001d019479_P004	Maize	plastid	66.72	64.7
EER87785	Sorghum	plastid	63.92	63.82
Zm00001d033937_P002	Maize	plastid	63.76	63.55
Zm00001d045462_P001	Maize	plastid	63.76	63.55
TraesCS4A01G418200.1	Wheat	plastid	63.1	63.31
GSMUA_Achr1P16610_001	Banana	plastid	31.8	63.28
TraesCS7D01G064300.1	Wheat	plastid	62.93	63.24
HORVU7Hr1G012380.5	Barley	plastid	62.77	63.18
TraesCS7A01G070100.1	Wheat	plastid	62.11	62.42
Os06t0133000-02	Rice	plastid	62.6	62.4
Zm00001d029360_P001	Maize	cytosol	23.39	56.8
GSMUA_Achr1P16620_001	Banana	cytosol	20.76	56.25
Zm00001d033690_P001	Maize	cytosol, plastid	31.14	55.59
Zm00001d027242_P002	Maize	plastid	43.33	44.88
PGSC0003DMT400047731	Potato	plastid	35.91	34.01
PGSC0003DMT400003356	Potato	cytosol	35.26	27.9
PGSC0003DMT400035217	Potato	plastid	11.7	20.82
PGSC0003DMT400035218	Potato	plastid	12.52	18.45
PGSC0003DMT400078688	Potato	cytosol	10.71	16.67
PGSC0003DMT400021444	Potato	plastid	27.35	16.58

Protein Annotations

KEGG:00500+2.4.1.21	EntrezGene:102577459	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	ProteinID:ABE03766	ProteinID:ABE03766.1
ProteinID:ABY89288	ProteinID:ABY89288.2	ProteinID:ACB05866	ProteinID:ACB05866.1	ProteinID:ACB05867	ProteinID:ACB05867.1
ProteinID:ADM79559	ProteinID:ADM79559.1	ProteinID:ADM79560	ProteinID:ADM79560.1	ProteinID:ADM79561	ProteinID:ADM79561.1
ProteinID:ADM79562	ProteinID:ADM79562.1	ProteinID:ADM79563	ProteinID:ADM79563.1	ProteinID:ADM79564	ProteinID:ADM79564.1
ProteinID:ADM79565	ProteinID:ADM79565.1	ProteinID:ADM79566	ProteinID:ADM79566.1	ProteinID:ADM79567	ProteinID:ADM79567.1
ProteinID:ADM79568	ProteinID:ADM79568.1	ProteinID:CAA36667	ProteinID:CAA36667.1	ProteinID:CAA36668	ProteinID:CAA36668.1
ProteinID:CAA41359	ProteinID:CAA41359.1	ProteinID:CAA58220	ProteinID:CAA58220.1	EMBL:DQ387451	EMBL:EU403426
EMBL:EU548081	EMBL:EU548082	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009011	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	GO:GO:0033201	GO:GO:0033840	GO:GO:0102502
InterPro:GS/SS	InterPro:Glyco_trans_1	EMBL:HM561818	EMBL:HM561819	EMBL:HM561820	EMBL:HM561821
EMBL:HM561822	EMBL:HM561823	EMBL:HM561824	EMBL:HM561825	EMBL:HM561826	EMBL:HM561827
HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	EnsemblPlantsGene:PGSC0003DMG400012111	PGSC:PGSC0003DMG400012111	EnsemblPlants:PGSC0003DMT400031568
PANTHER:PTHR12526	PANTHER:PTHR12526:SF383	UniProt:Q00775	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095
UniParc:UPI0000137B04	EMBL:X52416	EMBL:X52417	EMBL:X58453	EMBL:X83220	RefSeq:XP_006343763.1
RefSeq:XP_015162572.1	RefSeq:XP_015162573.1	SEG:seg	:	:	:

Description

WAXYGranule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q00775]

Coordinates

chr8:-:56782186..56785790

Molecular Weight (calculated)

66579.5 Da

IEP (calculated)

7.337

GRAVY (calculated)

-0.051

Length

607 amino acids

Sequence
(BLAST)

001: MASITASHHF VSRSQTSLDT KSTLSQIGLR NHTLTHNGLR AVNKLDGLQS RTNTKVTPKM ASRTETKRPG CSATIVCGKG MNLIFVGTEV GPWSKTGGLG
101: DVLGGLPPAL AARGHRVMTI SPRYDQYKDA WDTSVAVEVK VGDSIEIVRF FHCYKRGVDR VFVDHPMFLE KVWGKTGSKI YGPKAGLDYL DNELRFSLLC
201: QAALEAPKVL NLNSSNYFSG PYGEDVLFIA NDWHTALIPC YLKSMYQSRG IYLNAKVAFC IHNIAYQGRF SFSDFPLLNL PDEFRGSFDF IDGYEKPVKG
301: RKINWMKAGI LESHRVVTVS PYYAQELVSA VDKGVELDSV LRKTCITGIV NGMDTQEWNP ATDKYTDVKY DITTVMDAKP LLKEALQAAV GLPVDKKIPL
401: IGFIGRLEEQ KGSDILVAAI HKFIGLDVQI VVLGTGKKEF EQEIEQLEVL YPNKAKGVAK FNVPLAHMIT AGADFMLVPS RFEPCGLIQL HAMRYGTVPI
501: CASTGGLVDT VKEGYTGFHM GAFNVECDVV DPADVLKIVT TVARALAVYG TLAFAEMIKN CMSEELSWKE PAKKWETLLL GLGASGSEPG VEGEEIAPLA
601: KENVATP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.