Factsheet for PGSC0003DMT400078688

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g091760.1.1	Tomato	cytosol	41.28	86.1
VIT_07s0205g00090.t01	Wine grape	plastid	33.59	59.82
AT5G65685.5	Thale cress	extracellular, golgi	49.74	38.42
Bra024412.1-P	Field mustard	plastid	56.41	37.1
KRH74428	Soybean	plastid	63.08	35.96
CDY45619	Canola	plastid	56.67	33.54
CDY08760	Canola	plastid	58.72	33.38
KXG31317	Sorghum	plastid	52.05	29.08
Zm00001d051976_P002	Maize	plastid	36.15	26.91
Os02t0807100-01	Rice	plastid	20.0	25.16
PGSC0003DMT400035218	Potato	plastid	22.82	21.6
VIT_07s0205g00110.t01	Wine grape	cytosol, nucleus	26.41	21.19
KRH39530	Soybean	cytosol	13.08	18.55
PGSC0003DMT400021444	Potato	plastid	36.67	14.29
PGSC0003DMT400047731	Potato	plastid	19.49	11.86
PGSC0003DMT400031568	Potato	plastid	16.67	10.71
PGSC0003DMT400003356	Potato	cytosol	20.26	10.3
CDY21007	Canola	plastid	23.85	8.75
PGSC0003DMT400035217	Potato	plastid	4.62	5.28
HORVU0Hr1G005540.2	Barley	cytosol	0.51	0.2
CDY21006	Canola	nucleus	0.0	0.0

Protein Annotations

EMBL:EU661369	EnsemblPlants:PGSC0003DMT400078688	EnsemblPlantsGene:PGSC0003DMG400030619	Gene3D:3.40.50.2000	InterPro:Starch_synth_cat_dom	KEGG:00500+2.4.1.21
PANTHER:PTHR12526	PANTHER:PTHR12526:SF382	PFAM:PF08323	PGSC:PGSC0003DMG400030619	ProteinID:ACD13788	ProteinID:ACD13788.1
SUPFAM:SSF53756	UniParc:UPI000294F593	UniProt:M1D0J6	MapMan:35.1	:	:

Description

Starch synthase V [Source:PGSC_GENE;Acc:PGSC0003DMG400030619]

Coordinates

chr2:+:42100875..42107550

Molecular Weight (calculated)

43564.6 Da

IEP (calculated)

6.947

GRAVY (calculated)

0.025

Length

390 amino acids

Sequence
(BLAST)

001: MVLTSLIGSK EASEFRWLVM DSIGSIADYF SEKMHKQDTE LLVELRHFPR KSRKSGYHII HICTEMAPVV SVGSLAPYVT GLSRALQRKG NLVEVILPKY
101: ASLNLNEVHG LREVEAEFHS YFNGQLHGNR IWTGVVCGIG VTFIEPLYYS AFFGCENIYG YSNDFERFTY FSRASLDYII KAGKHPDVLH IHNWETSIVG
201: PLFWDVFVNQ GLGGTRIMLT CQSFESQCVE QPEKLALCGL DPYGLHCSDR LQDNNKSHLV NVLKAGVVYS NNVIIMSSMQ TKGQIIHATS HGLEPTLTIH
301: KDKLVVAPPG FDSSAWDPSV DMFLPQNYSA DLKGKSVCKV SLQQHLGLQE KASIVLVGFT LVEDLPAKVY NQTLLMGISQ RLSLLLAFSL

Best Arabidopsis Sequence Match ( AT5G65685.10 )
(BLAST)

001: MILNKQRLAA VDELEQLKKD KEELLERINQ LEAESQIVIK KDKSSLFWEL LLRIDSMVIN GLVNIEEASS MRKLVKEHEA NISVFPLDVL QQGDAEILAE
101: LRRFTNKGKR NGLHVIHICT EMAPLVSVGP LASYITGLSC ALQEEGYMVE VILPKYSTLD LDEIEGLREI EADAYSYFDG QLHANRIWNG VVSGIGVTLI
201: QPVYYSSMFS RDKVYGYQDD FDRFAYFSRA SLDYIAKSGK QPDVLHIHNW QTAIVGPLFW DVFVNQGLEG TRILLTCQDF DKGLVPPEKL ELCGLDPAEL
301: HRLDRLQDNT NPHFVNILKG GVVYSNKVVI MSSSHSSIPG LEPTLAIHKD KLFFAPFGMD NSMEKDLCCD LHVSAYTSIK NL

Arabidopsis Description

UDP-Glycosyltransferase superfamily protein [Source:TAIR;Acc:AT5G65685]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.