CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76534	Canola	plastid	97.16	97.16
AT4G18240.1	Thale cress	plastid	87.65	85.96
GSMUA_Achr3P16350_001	Banana	endoplasmic reticulum, vacuole	15.78	72.85
VIT_10s0003g02880.t01	Wine grape	plastid	66.18	66.77
KRH58438	Soybean	nucleus	63.43	65.42
KRH42312	Soybean	nucleus	63.33	65.25
TraesCS1A01G353300.1	Wheat	cytosol	43.04	63.99
Solyc02g071040.2.1	Tomato	nucleus	61.18	62.34
PGSC0003DMT400021444	Potato	plastid	61.18	62.34
GSMUA_Achr8P27560_001	Banana	plastid	55.29	60.0
OQU78343	Sorghum	plastid	50.0	56.11
GSMUA_Achr3P16340_001	Banana	plastid	40.2	55.93
TraesCS1B01G368500.1	Wheat	plastid	49.61	55.42
Zm00001d010821_P002	Maize	plastid	49.12	55.12
TraesCS1D01G356900.1	Wheat	plastid	49.31	55.09
Os05t0533600-02	Rice	plastid	49.61	55.06
HORVU1Hr1G080950.5	Barley	plastid	49.51	52.82
Os01t0720600-01	Rice	plastid	49.22	51.49
CDY45619	Canola	plastid	19.12	29.59
CDY08760	Canola	plastid	19.12	28.43
CDY34695	Canola	plastid	3.92	27.97
CDY21007	Canola	plastid	28.04	26.91
CDY43274	Canola	plastid	18.04	26.36
CDY31209	Canola	plastid	27.65	26.31
CDX88091	Canola	plastid	16.76	26.27
CDX80428	Canola	plastid	16.76	26.27
CDX97980	Canola	plastid	27.84	26.03
CDY49799	Canola	mitochondrion	27.35	25.71
CDY37538	Canola	plastid	16.86	25.41
CDY71840	Canola	plastid	7.06	23.84
CDX73274	Canola	plastid	7.55	20.16
CDY55806	Canola	plastid	10.69	19.71
CDY34693	Canola	endoplasmic reticulum, golgi	7.55	19.35
CDY21006	Canola	nucleus	0.0	0.0

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.4	Gene3D:3.40.50.2000	GO:A0A078F736	UniProt:A0A078F736	EnsemblPlants:CDY08902
ProteinID:CDY08902	ProteinID:CDY08902.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0016740	InterPro:GS/SS	EnsemblPlantsGene:GSBRNA2T00000908001	InterPro:Glyco_trans_1	HAMAP:MF_00484	PFAM:PF00534
PFAM:PF08323	PFscan:PS51257	PANTHER:PTHR12526	PANTHER:PTHR12526:SF341	MetaCyc:PWY-622	SUPFAM:SSF53756
InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniPathway:UPA00164	UniParc:UPI0004EF3CF2	SEG:seg	:

Description

BnaC08g11320DBnaC08g11320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F736]

Coordinates

chrLK031990:+:363026..367977

Molecular Weight (calculated)

115746.0 Da

IEP (calculated)

5.399

GRAVY (calculated)

-0.552

Length

1020 amino acids

Sequence
(BLAST)

0001: MTTTKLSSCF LTNGLVGISC KREQGGSRRF FYLPSRRLLP ASCKIRQQRG FDSSKRQDIK KGSPEPILPI NSSLQSNSEE EDSQPDNGSA DTIHSTVETN
0101: HVDSSTENRD EDIQQSEVTR LKNKHTKKKE SDGQDLNVLT VPEVAKALSI NKSGGEQFSD GQFGELMTMI RNAEQNILRL DQARVSALAE LSKILSEKEA
0201: LQGEINVLEM KLAETDERIK TAAQEKVRAE LLEEQLEKLR QEMVSPPPES DGYVQSLSKE IETLKIENLS LRNDIETLKS KLESVENTDE RVVVLEKECS
0301: GLEFSVKDLE SKLLVSQEDV SKLSSLKTEC SDLWTKVESL QLLLDRATKQ AEQAVLVLQQ NQDFKSRVEK IEESLKEANV YKESSEKIQL YNELMQDKVE
0401: LLEERLEKSD AEIFSYVQLY QESIKEFQET LGRLKEESNR KEPRDEPVDD MPWDYWSRLL LTVDGWLLEK KIGSDDAESL REMVWKKDRR IHDTYIDVKD
0501: KSERDAISAF LKLVSSPTSQ GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRRGHLVEI ILPKYDCMQY DRVRDLRALD TVVESYFDGK LYKNKIWIGT
0601: VEGLPVHFIE PQHPSKFFWR GQFYGEKDDF KRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA RICFTCHNFE YQGTASASDL
0701: GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TSEGGKGLHS TLNSNSKKFI GILNGIDTDS WNPATDPFLK AQFNARDLQG
0801: KEENKYALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH VRLLLKYDEA LSHSIYAASD
0901: MFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFAFQTADE QGLNYALERA FNHYKKDEEK WMRLMEKVMS IDFSWASSAT
1001: QYEELYTRSV AKARASPNRT

Best Arabidopsis Sequence Match ( AT4G18240.1 )
(BLAST)

0001: MTTKLSSFCF LTHGLAGISC EREHGSSRRF FYLPSRRLVS TSCKMRQQRG FDSSKRQEVK KGSPKPILSI NSGLQSNNDE ESDLENGSAD SVPSLKSDAE
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT

Arabidopsis Description

SS4Probable starch synthase 4, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WVX5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.