CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009747.1-P	Field mustard	plastid	96.31	96.31
CDX88091	Canola	plastid	96.31	96.31
AT5G24300.1	Thale cress	plastid	89.09	88.96
TraesCS7B01G018600.1	Wheat	cytosol	55.76	69.67
Zm00001d045261_P006	Maize	plastid	58.22	67.68
VIT_16s0098g01780.t01	Wine grape	plastid	64.98	66.82
PGSC0003DMT400047731	Potato	plastid	63.29	64.27
KRH53506	Soybean	plastid	62.37	64.04
Solyc03g083090.2.1	Tomato	plastid	62.98	63.96
HORVU7Hr1G025390.4	Barley	cytosol, plastid	56.37	63.83
KRH64431	Soybean	plastid	63.13	63.13
Os06t0160700-01	Rice	plastid	58.99	59.91
KXG19354	Sorghum	plastid	58.99	59.35
TraesCS7A01G120300.1	Wheat	plastid	57.14	57.76
TraesCS7D01G117800.1	Wheat	plastid	57.3	56.95
GSMUA_Achr3P03290_001	Banana	plastid	58.68	55.28
KRH16258	Soybean	extracellular	11.06	52.94
CDY34695	Canola	plastid	10.45	47.55
CDY37538	Canola	plastid	40.4	38.85
CDY43274	Canola	plastid	41.17	38.4
CDY71840	Canola	plastid	15.05	32.45
CDX73274	Canola	plastid	16.28	27.75
CDY55806	Canola	plastid	23.35	27.49
CDY34693	Canola	endoplasmic reticulum, golgi	13.06	21.36
CDX76534	Canola	plastid	26.42	16.86
CDY08902	Canola	plastid	26.27	16.76
CDY21007	Canola	plastid	25.04	15.33
CDY49799	Canola	mitochondrion	25.5	15.3
CDY31209	Canola	plastid	25.19	15.3
CDX97980	Canola	plastid	25.5	15.22
CDY45619	Canola	plastid	15.21	15.02
CDY08760	Canola	plastid	15.67	14.87
CDY21006	Canola	nucleus	0.0	0.0

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.1	Gene3D:3.40.50.2000	GO:A0A078CZ82	EnsemblPlants:CDX80428	ProteinID:CDX80428
ProteinID:CDX80428.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009501	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0019252	InterPro:GS/SS
EnsemblPlantsGene:GSBRNA2T00133501001	InterPro:Glyco_trans_1	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526
PANTHER:PTHR12526:SF431	MetaCyc:PWY-622	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniPathway:UPA00164
UniParc:UPI0004EEDC47	SEG:seg	:	:	:	:

Description

BnaC07g30160D

Coordinates

chrLK031821:+:410194..414119

Molecular Weight (calculated)

71716.8 Da

IEP (calculated)

5.627

GRAVY (calculated)

-0.242

Length

651 amino acids

Sequence
(BLAST)

001: MASLQISGGS VRFVAGFNRT GCIRPICSLG FPRSRRRISI GRPLLLRCST LSGESETDEI TDSDRDGSGA SSASLLGFQL APPGDQQIIS TNTTKEATHQ
101: EENTDATDES EMADFGVPGN RAVEEGAAEI EYTTVKAEVI NNLVFVTSEA APYSKTGGLG DVCGSLPIAL AGRGHRVMVI SPRYLNGTSA DKNYSRAKDL
201: GVRVTVHCFG GSQEVSFYHE YRDGVDWVFI DHQSYHRPGN PYGDSKGAFG DNQFRFTLLC HAACEAPLVL PLGGFTYGEK SLFLVNDWHA GLVPILLAAK
301: YRPYGVYKDA RSILIIHNLA HQGVEPAASY SNLGLPSEWY GAVGWVFPTW ARTHALDTGE AVNVLKGAIV TSDRIITVSQ GYAWEITTVE GGYGLQDLLS
401: SRKSVINGIT NGINIDEWDP SKDEHIPFHY SLDDYSNKVK CKMALQKELG LPIRPECPMI GFIGRLDYQK GIDLIQTAGP DLMVDDIQFV MLGSGDPKCE
501: SWMRSMEETY RDKFRGWVGF NVPISHRITA GCDILLMPSR FEPCGLNQLY AMRYGTIPVV HATGGLRDTV ENFNPYAEGG AGAGTGWVFS PLSKDSMVSA
601: LRLSAATYRE YKESWEGLMR RGMSRNYSWE NAAVQYEQVF QWVFMDRPYI N

Best Arabidopsis Sequence Match ( AT5G24300.2 )
(BLAST)

001: MASLQISGSV KFEPFVGFNR IRHFRPIASL GFPRFRRRFS IGRSLLLRRS SSFSGDSRES DEERFITDAE RDGSGSVLGF QLTPPGDQQT VSTSTGEITH
101: HEEKKEAIDQ IVMADFGVPG NRAVEEGAAE VGIPSGKAEV VNNLVFVTSE AAPYSKTGGL GDVCGSLPIA LAGRGHRVMV ISPRYLNGTA ADKNYARAKD
201: LGIRVTVNCF GGSQEVSFYH EYRDGVDWVF VDHKSYHRPG NPYGDSKGAF GDNQFRFTLL CHAACEAPLV LPLGGFTYGE KSLFLVNDWH AGLVPILLAA
301: KYRPYGVYKD ARSILIIHNL AHQGVEPAAT YTNLGLPSEW YGAVGWVFPT WARTHALDTG EAVNVLKGAI VTSDRIITVS QGYAWEITTV EGGYGLQDLL
401: SSRKSVINGI TNGINVDEWN PSTDEHIPFH YSADDVSEKI KCKMALQKEL GLPIRPECPM IGFIGRLDYQ KGIDLIQTAG PDLMVDDIQF VMLGSGDPKY
501: ESWMRSMEET YRDKFRGWVG FNVPISHRIT AGCDILLMPS RFEPCGLNQL YAMRYGTIPV VHGTGGLRDT VENFNPYAEG GAGTGTGWVF TPLSKDSMVS
601: ALRLAAATYR EYKQSWEGLM RRGMTRNYSW ENAAVQYEQV FQWVFMDPPY VS

Arabidopsis Description

SS1Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QN76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.