Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G025390.4 | Barley | cytosol, plastid | 98.08 | 88.87 |
| Zm00001d045261_P006 | Maize | plastid | 89.06 | 82.86 |
| TraesCS7A01G120300.1 | Wheat | plastid | 98.66 | 79.81 |
| TraesCS7D01G117800.1 | Wheat | plastid | 99.42 | 79.08 |
| Os06t0160700-01 | Rice | plastid | 90.79 | 73.79 |
| KXG19354 | Sorghum | plastid | 88.68 | 71.41 |
| VIT_16s0098g01780.t01 | Wine grape | plastid | 72.74 | 59.87 |
| Solyc03g083090.2.1 | Tomato | plastid | 71.21 | 57.88 |
| KRH53506 | Soybean | plastid | 70.06 | 57.57 |
| PGSC0003DMT400047731 | Potato | plastid | 70.25 | 57.1 |
| KRH64431 | Soybean | plastid | 71.21 | 56.99 |
| AT5G24300.1 | Thale cress | plastid | 71.02 | 56.75 |
| CDX88091 | Canola | plastid | 70.25 | 56.22 |
| Bra009747.1-P | Field mustard | plastid | 70.25 | 56.22 |
| CDX80428 | Canola | plastid | 69.67 | 55.76 |
| KRH16258 | Soybean | extracellular | 14.2 | 54.41 |
| GSMUA_Achr3P03290_001 | Banana | plastid | 71.02 | 53.55 |
| TraesCS6B01G336400.1 | Wheat | plastid | 47.02 | 36.35 |
| TraesCS1B01G155700.3 | Wheat | plastid | 46.26 | 32.44 |
| TraesCS2B01G390700.1 | Wheat | plastid | 36.66 | 31.89 |
| TraesCS7B01G093800.2 | Wheat | plastid | 45.49 | 29.7 |
| TraesCS1B01G368500.1 | Wheat | plastid | 29.75 | 16.98 |
| TraesCS2B01G491700.2 | Wheat | plastid | 27.26 | 11.13 |
| TraesCS1B01G119300.1 | Wheat | plastid | 26.87 | 8.7 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G018600.1 | EnsemblPlantsGene:TraesCS7B01G018600 | Gene3D:3.40.50.2000 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004373 |
| GO:GO:0016740 | HAMAP:MF_00484 | InterPro:GS/SS | InterPro:Glyco_trans_1 | InterPro:Starch_synth_cat_dom | KEGG:00500+2.4.1.21 |
| PANTHER:PTHR12526 | PANTHER:PTHR12526:SF431 | PFAM:PF00534 | PFAM:PF08323 | SUPFAM:SSF53756 | TIGR:cd03791 |
| TIGRFAMs:TIGR02095 | MapMan:3.2.2.4.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:15592874..15600835
Molecular Weight (calculated)
58225.4 Da
IEP (calculated)
6.365
GRAVY (calculated)
-0.220
Length
521 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAKDQPQAK VTRSIVFVTG EAAPYAKSGG LGDVCGSLPI ALAARGHRVM VVMPRYLNGS SDKNYAKALY TAKHIKIPCF GGSHEVTFFH EYRDNVDWVF
101: VDHPSYHRPG SLYGDNFGAF GDNQFRYTLL CYAACEAPLI LELGGYIYGQ NCMFVVNDWH ASLVPVLLAA KYRPYGVYRD SRSTLVIHNL AHQGVEPAST
201: YPDLGLPPEW YGALEWVFPE WARRHALDKG EAVNFLKGAV VTADRIVTVS QGYSWEVTTA EGGQGLNELL SSRKSVLNGI VNGIDINDWN PTTDKCLPHH
301: YSVDDLSGKA KCKAELQKEL GLPVREDVPL IGFIGRLDYQ KGIDLIKMAI PELMREDVQF VMLGSGDPIF EGWMRSTESS YKDKFRGWVG FSVPVSHRIT
401: AGCDILLMPS RFEPCGLNQL YAMQYGTVPV VHGTGGLRDT VETFNPFGAK GEEGTGWAFS PLTVDKMLWA LRTAMSTFRE HKPSWEGLMK RGMTKDHTWD
501: HAAEQYEQIF EWAFVDQPYV M
101: VDHPSYHRPG SLYGDNFGAF GDNQFRYTLL CYAACEAPLI LELGGYIYGQ NCMFVVNDWH ASLVPVLLAA KYRPYGVYRD SRSTLVIHNL AHQGVEPAST
201: YPDLGLPPEW YGALEWVFPE WARRHALDKG EAVNFLKGAV VTADRIVTVS QGYSWEVTTA EGGQGLNELL SSRKSVLNGI VNGIDINDWN PTTDKCLPHH
301: YSVDDLSGKA KCKAELQKEL GLPVREDVPL IGFIGRLDYQ KGIDLIKMAI PELMREDVQF VMLGSGDPIF EGWMRSTESS YKDKFRGWVG FSVPVSHRIT
401: AGCDILLMPS RFEPCGLNQL YAMQYGTVPV VHGTGGLRDT VETFNPFGAK GEEGTGWAFS PLTVDKMLWA LRTAMSTFRE HKPSWEGLMK RGMTKDHTWD
501: HAAEQYEQIF EWAFVDQPYV M
001: MASLQISGSV KFEPFVGFNR IRHFRPIASL GFPRFRRRFS IGRSLLLRRS SSFSGDSRES DEERFITDAE RDGSGSVLGF QLTPPGDQQT VSTSTGEITH
101: HEEKKEAIDQ IVMADFGVPG NRAVEEGAAE VGIPSGKAEV VNNLVFVTSE AAPYSKTGGL GDVCGSLPIA LAGRGHRVMV ISPRYLNGTA ADKNYARAKD
201: LGIRVTVNCF GGSQEVSFYH EYRDGVDWVF VDHKSYHRPG NPYGDSKGAF GDNQFRFTLL CHAACEAPLV LPLGGFTYGE KSLFLVNDWH AGLVPILLAA
301: KYRPYGVYKD ARSILIIHNL AHQGVEPAAT YTNLGLPSEW YGAVGWVFPT WARTHALDTG EAVNVLKGAI VTSDRIITVS QGYAWEITTV EGGYGLQDLL
401: SSRKSVINGI TNGINVDEWN PSTDEHIPFH YSADDVSEKI KCKMALQKEL GLPIRPECPM IGFIGRLDYQ KGIDLIQTAG PDLMVDDIQF VMLGSGDPKY
501: ESWMRSMEET YRDKFRGWVG FNVPISHRIT AGCDILLMPS RFEPCGLNQL YAMRYGTIPV VHGTGGLRDT VENFNPYAEG GAGTGTGWVF TPLSKDSMVS
601: ALRLAAATYR EYKQSWEGLM RRGMTRNYSW ENAAVQYEQV FQWVFMDPPY VS
101: HEEKKEAIDQ IVMADFGVPG NRAVEEGAAE VGIPSGKAEV VNNLVFVTSE AAPYSKTGGL GDVCGSLPIA LAGRGHRVMV ISPRYLNGTA ADKNYARAKD
201: LGIRVTVNCF GGSQEVSFYH EYRDGVDWVF VDHKSYHRPG NPYGDSKGAF GDNQFRFTLL CHAACEAPLV LPLGGFTYGE KSLFLVNDWH AGLVPILLAA
301: KYRPYGVYKD ARSILIIHNL AHQGVEPAAT YTNLGLPSEW YGAVGWVFPT WARTHALDTG EAVNVLKGAI VTSDRIITVS QGYAWEITTV EGGYGLQDLL
401: SSRKSVINGI TNGINVDEWN PSTDEHIPFH YSADDVSEKI KCKMALQKEL GLPIRPECPM IGFIGRLDYQ KGIDLIQTAG PDLMVDDIQF VMLGSGDPKY
501: ESWMRSMEET YRDKFRGWVG FNVPISHRIT AGCDILLMPS RFEPCGLNQL YAMRYGTIPV VHGTGGLRDT VENFNPYAEG GAGTGTGWVF TPLSKDSMVS
601: ALRLAAATYR EYKQSWEGLM RRGMTRNYSW ENAAVQYEQV FQWVFMDPPY VS
Arabidopsis Description
SS1Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QN76]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.