Factsheet for VIT_11s0065g00150.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g042830.2.1	Tomato	plastid	69.59	68.57
PGSC0003DMT400035218	Potato	plastid	42.15	61.89
PGSC0003DMT400035217	Potato	plastid	29.92	53.08
VIT_07s0205g00090.t01	Wine grape	plastid	9.59	26.48
VIT_10s0003g02880.t01	Wine grape	plastid	40.5	24.23
VIT_02s0025g02790.t01	Wine grape	plastid	22.48	22.48
VIT_15s0048g02600.t01	Wine grape	plastid	22.81	22.48
VIT_16s0098g01780.t01	Wine grape	plastid	22.81	21.8
VIT_14s0108g00940.t01	Wine grape	plastid	24.96	18.88
VIT_07s0205g00110.t01	Wine grape	cytosol, nucleus	14.55	18.11
VIT_10s0116g01730.t01	Wine grape	plastid	33.72	13.35

Protein Annotations

KEGG:00500+2.4.1.21	EntrezGene:100233071	wikigene:100233071	Gene3D:3.40.50.2000	MapMan:35.1	ProteinID:ACD13791
ProteinID:ACD13791.1	ProteinID:CCB48907	ProteinID:CCB48907.1	EMBL:EU661372	UniProt:F6H9N8	EMBL:FN595502
GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009011	GO:GO:0009058
GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757
GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1	EntrezGene:LOC100233071	wikigene:LOC100233071	HAMAP:MF_00484
PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF539	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom
TIGR:TC63376	TIGR:TC67353	TIGR:TC69402	TIGRFAMs:TIGR02095	UniParc:UPI000210818F	ArrayExpress:VIT_11s0065g00150
EnsemblPlantsGene:VIT_11s0065g00150	EnsemblPlants:VIT_11s0065g00150.t01	unigene:Vvi.4576	:	:	:

Description

Starch synthase, chloroplastic/amyloplastic [Source:UniProtKB/TrEMBL;Acc:F6H9N8]

Coordinates

chr11:+:13509591..13529415

Molecular Weight (calculated)

68547.4 Da

IEP (calculated)

6.692

GRAVY (calculated)

-0.199

Length

605 amino acids

Sequence
(BLAST)

001: MSSVVEMKID AFLSFNHLLK PKPSFTTTKL SSRFTFHDHN KKQTCKFKIR SQVGAEKQTA SVDSRVKDIV WPSPDDEIVF WNKEFPHWDV SQQAPAEIEK
101: DSDLMHIIHV TAEMAPIAKV GGLGDVVTGL ARACLSRAHK VDIMLPFYEC IQREQISELE LITTYESYYD GNWVPTNAYR GVVSGIPVIF IQPSNYFFKG
201: QYVYGGSYNE LEAYLYFSRA CLEWMQVTGT QPDIIHIHEW QTGSLPLLYW DMYHYLSLKK PRIVLTIHNM EHYGECRKEE LSKCGLDGSI YATLDKAVDD
301: RTIGHNPERL SLLKGGIVYS NVVITVSPTY LKETLCSGWL ASTLILNRDK YYGVLNGIDT AMWNPATDVF LPSKFNARNT EGKKICKYYV QRGLGLILKG
401: TSASKLINEM ENKVPLIVCI SRLVAQKGLH LITHAIKQVE ERGGQIIVLG KASDGRVQTE FEGLANLHNQ GPSIRILLTY SEELSHMLYA AADMVLVPSI
501: YEPCGLAQMI GMRYGAIPIV RKTGGLADTV FDMDDQLHRE TANGFVFEGI DEGSLNWALD RAFSFYREKP EEWNTTIQKV MEIDNSWNNT AGKYIDIYNS
601: VRVRC

Best Arabidopsis Sequence Match ( AT4G18240.1 )
(BLAST)

0001: MTTKLSSFCF LTHGLAGISC EREHGSSRRF FYLPSRRLVS TSCKMRQQRG FDSSKRQEVK KGSPKPILSI NSGLQSNNDE ESDLENGSAD SVPSLKSDAE
0101: KGSSIHGSID MNHADENLEK KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI SDGQFGELMT MIRSAEKNIL
0201: RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK
0301: SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN
0401: VYKESSEKIQ QYNELMQHKV TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL LTVDGWLLEK KIASNDADLL
0501: RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD
0601: TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA
0701: RICFTCHNFE YQGTASASEL GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS TLNFHSKKFI GILNGIDTDS
0801: WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH
0901: VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK
1001: WMRLVEKVMS IDFSWGSSAT QYEELYTRSV SRARAVPNRT

Arabidopsis Description

SS4Probable starch synthase 4, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WVX5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.