CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plastid
Any Predictor:	nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030218.1-P	Field mustard	nucleus	99.7	98.21
CDX89500	Canola	cytosol, peroxisome, plastid	96.53	94.95
AT2G22680.1	Thale cress	cytosol, peroxisome, plastid	79.46	77.01
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	63.44	61.31
CDY31616	Canola	nucleus	63.29	60.99
KRH74431	Soybean	mitochondrion	49.4	48.09
VIT_07s0205g00030.t01	Wine grape	nucleus	47.58	48.02
KRH45468	Soybean	cytosol, peroxisome	28.85	47.39
PGSC0003DMT400078676	Potato	plastid	50.3	46.84
KRH39527	Soybean	extracellular, golgi	38.07	46.58
Solyc02g091710.2.1	Tomato	plastid	50.3	46.38
CDY52535	Canola	plastid	47.89	44.65
CDY08765	Canola	plastid	47.13	44.07
KRH75634	Soybean	nucleus	43.05	43.98
CDY45614	Canola	plastid	46.53	43.26
CDY28148	Canola	plastid	42.45	41.38
CDY37838	Canola	plastid	30.36	40.2
CDY45010	Canola	mitochondrion, peroxisome	42.6	38.74
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	39.73	38.17
GSMUA_Achr5P14740_001	Banana	mitochondrion	38.52	36.85
Zm00001d024940_P001	Maize	peroxisome	40.48	36.36
TraesCS2A01G045100.1	Wheat	peroxisome	41.09	35.79
GSMUA_Achr7P01890_001	Banana	mitochondrion	38.52	35.71
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	39.43	35.66
TraesCS2D01G043700.1	Wheat	peroxisome	40.94	35.52
Zm00001d004553_P001	Maize	peroxisome	40.03	35.33
TraesCS2B01G057300.1	Wheat	peroxisome	40.79	35.06
KRH45469	Soybean	nucleus	9.37	35.03
GSMUA_Achr4P22090_001	Banana	nucleus	37.46	34.69
OQU81040	Sorghum	peroxisome	35.8	33.15
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	22.51	27.64
CDY67781	Canola	cytosol	21.9	27.41
CDY31517	Canola	extracellular, mitochondrion, plastid	24.47	27.09
CDY52708	Canola	extracellular, mitochondrion, plastid	24.02	26.41
CDY32819	Canola	cytosol	22.66	24.83
CDX91506	Canola	mitochondrion	22.36	24.34
CDX74871	Canola	mitochondrion	22.36	24.26
CDX93597	Canola	cytosol	23.41	24.11
CDX95099	Canola	cytosol	19.18	22.6
CDY17702	Canola	mitochondrion	12.84	22.08
CDX77800	Canola	nucleus	16.01	18.66
CDX93598	Canola	endoplasmic reticulum, golgi, mitochondrion, vacuole	0.3	0.52

Protein Annotations

MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	GO:A0A078GLZ5	UniProt:A0A078GLZ5	EnsemblPlants:CDY25618
ProteinID:CDY25618	ProteinID:CDY25618.1	ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00032898001	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	PFAM:PF13519	PFAM:PF17123	PFscan:PS50089	PANTHER:PTHR10579
PANTHER:PTHR10579:SF59	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0004EE3ED7
InterPro:VWF_A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:

Description

BnaA04g13100DBnaA04g13100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLZ5]

Coordinates

chrLK032177:+:309372..311390

Molecular Weight (calculated)

71957.6 Da

IEP (calculated)

10.142

GRAVY (calculated)

-0.301

Length

662 amino acids

Sequence
(BLAST)

001: MISGWRRAFC TSIPKERHDE DDSNCVLDSP EDQRFRHKPS SKFGFFSTPS TPRSVSGTYS LRCRTSAATA VATATPSASL PSTPKLTCRT TTAESTPATT
101: PTRNSSLVSS PASFSLLKSK LRFNKAKSSN KCGICSQSVK PGQGTAIFTA ECSHTFHFPC VTSRAAADHN RLVTCPVCGS SLLPETRNYG KPGSQTGQET
201: SRLRVYNDDE PLISSPMSPA GFHTILESDE NEDGEFTGFS LLTDDSLRNV EVKLSPESAI VAAVKGYETY SVVMKVKSPP LTTARRLPVD LVIVLDVAGR
301: LESLKRTMKL LISNLKETDR LSIVAFSSSS KRLLPLRRMT ANGRRSARRI VDIISVSGAG VACNGGGITA NDALKKAVKV LEDRRQKNPF ATVFVLTDRQ
401: AHQAQLAYSK IPVVWLGAWD HAVSEDAFAR SINGYLSLSV QDLGLSLGLV SGSGQGEITA VYSLSGRPAW LGTGSVRLGD MYAGEERALL VEIKAPVSSS
501: TTSRSHRILT VRSRYVDPTT QEIRNPEDRA LLIPYPVTVR SSSNPNIGRL RNLHVSTRAV AESRRLIERN NYSGAERLLT SARALLVQYG LSSSDTCLRG
601: LDAELADLNG VRGRQLTSSL ESLEPLTPTS AWKAAERLAK VAKMRKHMNR VSDLHGFENA RF

Best Arabidopsis Sequence Match ( AT2G22680.1 )
(BLAST)

001: MLNGWRRAFC TSIPKETNQN DVDDDGLVGL RHKSTSRFGF FSTPSTPRSD SGTGTYSLRC RTSTATAVST TSSLPGTPKL KCKTTTTGET TPRNRSLVSL
101: LTPSSSSISP ASFTLLKSKL RFKQSSSNKC GICLQSVKSG QGTAIFTAEC SHTFHFPCVT SRAAANHNRL ASCPVCGSSL LPEIRNYAKP ESQIKPEIKN
201: KSLRVYNDDE ALISSPISPA GFHTILESDE NEDCEEFTGF SVNTPSPLTA KLLTDRNVDV KLSPESAIVA SGKGYETYSV VMKVKSPPFP TARGFARRVP
301: VDLVAVLDVS GRNSGGKLEM LKQTMRIVLS NLREMDRLSI IAFSSSSKRL SPLRRMTANG RRSARRIVDI ITVPGSVSGV GIDFSGEGMS VNDALKKAVK
401: VLDDRRQKNP FTAVFVLTDR QAHQVAQLAH SRIPIHTIWL SHAIPEDAFA RTINGYLSLS VQDLGLQLGI VSGLGQGEIT SVYSLSGRPA WLGTGSIRLG
501: DMYAEEERAL LVEIKSPVNN SLTGSRSHKI MTVRSRYVDP TTQELRNPED RALLIPTPLT VRSSSNPNIS RLRNLHVSTR AVAESRRLIE RNHYSGAHRL
601: LTSARALLVQ HGLSSSDACI RGLDAEIADL NSVKGRHVAA SESLESLTPT SAWKAAERLA KVAMVRKHMN RVSDLHGFEN ARF

Arabidopsis Description

WAVH1E3 ubiquitin-protein ligase WAVH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQ46]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.