CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74871	Canola	mitochondrion	97.2	96.89
AT2G38970.1	Thale cress	mitochondrion	87.01	76.45
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	68.42	58.59
CDY31517	Canola	extracellular, mitochondrion, plastid	56.91	57.86
CDY52708	Canola	extracellular, mitochondrion, plastid	56.25	56.81
PGSC0003DMT400059986	Potato	nucleus	64.31	53.78
Solyc05g056140.2.1	Tomato	nucleus	64.14	53.57
GSMUA_Achr11P...	Banana	mitochondrion	44.57	50.37
GSMUA_Achr5P20480_001	Banana	mitochondrion	51.15	49.05
GSMUA_Achr11P...	Banana	mitochondrion	49.67	48.32
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	42.6	48.05
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	49.67	47.19
CDY67781	Canola	cytosol	40.95	47.07
CDX95099	Canola	cytosol	42.93	46.44
CDY32819	Canola	cytosol	45.89	46.19
TraesCS2B01G382300.1	Wheat	mitochondrion	51.15	44.75
TraesCS2D01G361900.1	Wheat	mitochondrion	50.82	44.65
Zm00001d017247_P002	Maize	mitochondrion	50.66	44.25
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	50.66	44.25
TraesCS6B01G254400.1	Wheat	mitochondrion	51.15	43.8
TraesCS6D01G207700.2	Wheat	mitochondrion	51.15	43.8
Os02t0619600-01	Rice	mitochondrion	50.99	43.72
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	51.15	43.68
Zm00001d051119_P001	Maize	nucleus	49.34	43.6
TraesCS6A01G227300.1	Wheat	mitochondrion	50.99	43.6
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	50.16	43.57
OQU85324	Sorghum	mitochondrion	50.0	43.24
CDX93597	Canola	cytosol	45.72	43.23
Os04t0508800-01	Rice	plasma membrane	49.34	42.37
OQU81931	Sorghum	mitochondrion	47.86	41.75
Zm00001d025825_P001	Maize	mitochondrion	48.03	41.48
GSMUA_Achr2P11780_001	Banana	golgi	32.07	41.31
Zm00001d027622_P001	Maize	mitochondrion	46.38	40.75
OQU93256	Sorghum	mitochondrion	46.55	40.54
Os03t0142500-01	Rice	plasma membrane	46.05	40.35
TraesCS4B01G344100.1	Wheat	mitochondrion	45.89	39.46
TraesCS5A01G512800.2	Wheat	mitochondrion	45.23	38.9
TraesCS4D01G339200.1	Wheat	mitochondrion	45.23	38.9
HORVU4Hr1G084340.1	Barley	mitochondrion	45.07	38.76
CDY28148	Canola	plastid	25.82	23.12
CDY25618	Canola	nucleus, peroxisome, plastid	24.34	22.36
CDY45010	Canola	mitochondrion, peroxisome	25.99	21.7
CDX89500	Canola	cytosol, peroxisome, plastid	23.85	21.55
CDY08765	Canola	plastid	24.67	21.19
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	23.68	21.02
CDY31616	Canola	nucleus	23.68	20.96
CDY37838	Canola	plastid	17.11	20.8
CDY45614	Canola	plastid	24.18	20.65
CDY52535	Canola	plastid	24.01	20.56
CDY17702	Canola	mitochondrion	12.5	19.74
CDX77800	Canola	nucleus	17.27	18.49
CDX93598	Canola	endoplasmic reticulum, golgi, mitochondrion, vacuole	1.64	2.59

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	GO:A0A078DQD0	EnsemblPlants:CDX91506	ProteinID:CDX91506
ProteinID:CDX91506.1	EnsemblPlantsGene:GSBRNA2T00152873001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
PFAM:PF00092	PFAM:PF13639	PFAM:PF14624	PFscan:PS50089	PANTHER:PTHR10579	PANTHER:PTHR10579:SF71
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	SignalP:SignalP-noTM	UniParc:UPI0004EE5CA9
InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf

Description

BnaC04g06440D

Coordinates

chrLK031867:+:1515575..1519381

Molecular Weight (calculated)

67156.8 Da

IEP (calculated)

7.767

GRAVY (calculated)

-0.260

Length

608 amino acids

Sequence
(BLAST)

001: MGTKWRKMKL ALGLNLCTYL PRTLEESPPA LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKKSS KTCSICLTKM KEGGGHALFT AECSHSFHFH
101: CIASNVKHGN QVCPVCRAKW KEIPMQHPPY LLHRLPTPRR PSMFNDDEPL EQQLAFPGKS LKKIMELKIH PEVSSFPRAE SREKFDVLVQ LRAAGMVTAP
201: LDLVTVLDIS GSMAGTKLAL LKRAMGHLAL QAVNSLVANG GTNIAEGLRK GVKVMEERRD ENPVASVILL SDGRDTYTMN NNQPDPNYKL LLPLSMHGRF
301: QIPVHSFGFG SDHDASLMHS VSEVSGGTFS FIESEAVIQD ALAQCIGGLL SVAVQELRLE IDGFSSDVCL GTIKAGSYSS LVGGDGRWGR VDIGDLYADE
401: ERDFLVSINI PAERRGDETE LLKMRCVYKD LLTKEVVTLE SHVLKIQRPE TVGEEEAVVV SIEVDRQRNR FLAAEAMVKA RGLAEEGDLA AAVTVIQKFR
501: QVLAETVSAR SNDGFCVALD REMKEMQERM ASRHVYEVSG RAYILSGLSS HSWQRATSRG ESGDGSSFVQ AYNYQTPSMV EMLNRSQATS YHRLIQPLLS
601: YVSQPKPR

Best Arabidopsis Sequence Match ( AT2G38970.1 )
(BLAST)

001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.