CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	90.93	89.24
CDY32819	Canola	cytosol	100.0	87.58
AT1G08050.1	Thale cress	plastid	77.88	64.27
CDX95099	Canola	cytosol	63.52	59.79
CDX93597	Canola	cytosol	72.02	59.25
CDY31517	Canola	extracellular, mitochondrion, plastid	49.72	43.98
CDY52708	Canola	extracellular, mitochondrion, plastid	48.96	43.02
CDX74871	Canola	mitochondrion	47.45	41.15
CDX91506	Canola	mitochondrion	47.07	40.95
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	55.58	40.33
GSMUA_Achr11P...	Banana	mitochondrion	47.26	40.0
GSMUA_Achr5P20480_001	Banana	mitochondrion	47.64	39.75
Solyc11g069600.1.1	Tomato	plastid	53.88	38.88
PGSC0003DMT400020896	Potato	mitochondrion, plastid	53.88	38.88
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	45.94	37.97
Os02t0619600-01	Rice	mitochondrion	49.15	36.67
Zm00001d017247_P002	Maize	mitochondrion	48.2	36.64
OQU93256	Sorghum	mitochondrion	48.2	36.53
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	49.15	36.52
Zm00001d051119_P001	Maize	nucleus	47.45	36.48
TraesCS6B01G254400.1	Wheat	mitochondrion	48.77	36.34
TraesCS6D01G207700.2	Wheat	mitochondrion	48.77	36.34
TraesCS6A01G227300.1	Wheat	mitochondrion	48.58	36.15
OQU85324	Sorghum	mitochondrion	48.02	36.13
Zm00001d027622_P001	Maize	mitochondrion	47.26	36.13
TraesCS2D01G361900.1	Wheat	mitochondrion	47.26	36.13
TraesCS2B01G382300.1	Wheat	mitochondrion	47.45	36.12
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	47.45	36.06
HORVU4Hr1G084340.1	Barley	mitochondrion	47.83	35.78
GSMUA_Achr11P...	Banana	mitochondrion	36.29	35.69
TraesCS4B01G344100.1	Wheat	mitochondrion	47.64	35.64
TraesCS5A01G512800.2	Wheat	mitochondrion	47.45	35.5
Os03t0142500-01	Rice	plasma membrane	46.5	35.45
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	46.88	35.43
TraesCS4D01G339200.1	Wheat	mitochondrion	47.26	35.36
Os04t0508800-01	Rice	plasma membrane	46.88	35.03
OQU81931	Sorghum	mitochondrion	44.61	33.86
Zm00001d025825_P001	Maize	mitochondrion	44.23	33.24
GSMUA_Achr2P11780_001	Banana	golgi	26.65	29.87
CDY28148	Canola	plastid	29.68	23.12
CDY25618	Canola	nucleus, peroxisome, plastid	27.41	21.9
CDY45010	Canola	mitochondrion, peroxisome	30.06	21.84
CDY17702	Canola	mitochondrion	15.88	21.82
CDX72660	Canola	cytosol, nucleus, peroxisome, plastid	28.17	21.75
CDY37838	Canola	plastid	20.23	21.4
CDY08765	Canola	plastid	28.54	21.33
CDY31616	Canola	nucleus	27.41	21.11
CDX89500	Canola	cytosol, peroxisome, plastid	26.65	20.95
CDY45614	Canola	plastid	28.17	20.93
CDY52535	Canola	plastid	27.98	20.85
CDX77800	Canola	nucleus	19.66	18.31
CDX93598	Canola	endoplasmic reticulum, golgi, mitochondrion, vacuole	0.0	0.0

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	GO:A0A078JQ47	UniProt:A0A078JQ47	EnsemblPlants:CDY67781
ProteinID:CDY67781	ProteinID:CDY67781.1	EnsemblPlantsGene:GSBRNA2T00066828001	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083
InterPro:IPR036465	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234
PANTHER:PTHR10579	PANTHER:PTHR10579:SF97	SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850
UniParc:UPI0004EEC8A0	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

BnaCnng56370DBnaCnng56370D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JQ47]

Coordinates

chrLK036503:+:6981..8796

Molecular Weight (calculated)

57916.9 Da

IEP (calculated)

6.016

GRAVY (calculated)

-0.214

Length

529 amino acids

Sequence
(BLAST)

001: MENPNKSPDP SSPPPRSTSS SGLPFSKSKC AICLDEIRKE DGKAIFTAEC SHSFHFGCIT SNVKHGNRIC PLCRTEWKQV PVFVNDRVVP APTFPVQTGF
101: EDDESLPVSQ PSGVAAEHQA LEIKLLPQVS AVEKSVARVD FAVLVHLKAA EGASDDRPAT RAPLDLIAVL DVSGSMEGTK LHLLKNAVAF VIDNLGETDR
201: LSVIAFSSGA RRLFPLRLMS ERGKREAIQA VNSLVAGGGT NIAEGLKIGA RVIEDRRWKN PVSGMMLLSD GQDNFTLSRS HSHSHSHSHS LVRPRADYQC
301: LIPSSRIPIH TFGFGADHDA ELMHTISQVS SGTFSFIETE TVIRDAFAQC IGGLLSVVAL DQVVEIECLH EEGLKISSIK AGSYRSRVSS DGRTAKIDVG
401: DMYAEEERDF LVILEIPRCE DESMPLVKIR CVYKDAVSRE IVRVESGELS IQRPEQLTGE EVVSVEVDRQ LNRFLVSEAM SEARVLADGE TQSARARDGL
501: CLSLSSELGA LQERMTSRRM YERSGRAYA

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.