Factsheet for VIT_06s0004g02630.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	69.0	70.85
PGSC0003DMT400020896	Potato	mitochondrion, plastid	70.51	70.12
Solyc11g069600.1.1	Tomato	plastid	70.37	69.99
CDY31517	Canola	extracellular, mitochondrion, plastid	56.79	69.23
CDY52708	Canola	extracellular, mitochondrion, plastid	55.97	67.77
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	64.06	66.34
Bra020234.1-P	Field mustard	mitochondrion	62.55	65.61
Bra002456.1-P	Field mustard	mitochondrion, plastid	62.55	65.14
GSMUA_Achr5P20480_001	Banana	mitochondrion	55.97	64.35
GSMUA_Achr11P...	Banana	mitochondrion	52.95	61.76
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	52.54	59.84
GSMUA_Achr11P...	Banana	mitochondrion	42.39	57.43
Zm00001d017247_P002	Maize	mitochondrion	54.05	56.61
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	41.56	56.22
OQU85324	Sorghum	mitochondrion	53.91	55.9
Zm00001d051119_P001	Maize	nucleus	52.54	55.67
CDY67781	Canola	cytosol	40.33	55.58
Os02t0619600-01	Rice	mitochondrion	53.91	55.43
TraesCS6D01G207700.2	Wheat	mitochondrion	53.22	54.65
CDY32819	Canola	cytosol	45.27	54.64
TraesCS6B01G254400.1	Wheat	mitochondrion	53.09	54.51
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	45.68	54.5
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	53.09	54.35
AT1G08050.1	Thale cress	plastid	47.74	54.29
TraesCS6A01G227300.1	Wheat	mitochondrion	52.95	54.29
TraesCS2D01G361900.1	Wheat	mitochondrion	51.44	54.19
TraesCS2B01G382300.1	Wheat	mitochondrion	51.3	53.81
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	51.17	53.59
Os04t0508800-01	Rice	plasma membrane	51.58	53.11
Zm00001d027622_P001	Maize	mitochondrion	50.34	53.03
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	50.89	53.0
OQU93256	Sorghum	mitochondrion	50.07	52.29
OQU81931	Sorghum	mitochondrion	49.38	51.65
Os03t0142500-01	Rice	plasma membrane	49.11	51.59
TraesCS4D01G339200.1	Wheat	mitochondrion	49.79	51.34
TraesCS5A01G512800.2	Wheat	mitochondrion	49.66	51.2
TraesCS4B01G344100.1	Wheat	mitochondrion	49.66	51.2
Zm00001d025825_P001	Maize	mitochondrion	49.11	50.85
HORVU4Hr1G084340.1	Barley	mitochondrion	49.11	50.64
CDX95099	Canola	cytosol	38.82	50.36
CDX93597	Canola	cytosol	44.31	50.23
GSMUA_Achr2P11780_001	Banana	golgi	30.86	47.67
VIT_00s0125g00180.t01	Wine grape	plasma membrane	43.35	45.4
VIT_07s0205g00030.t01	Wine grape	nucleus	28.26	31.4
VIT_18s0001g08100.t01	Wine grape	plastid	29.9	28.8
VIT_00s0475g00020.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	19.2	27.03
Bra018663.1-P	Field mustard	nucleus	43.62	24.11
VIT_15s0024g01790.t01	Wine grape	nucleus	7.41	18.82
VIT_19s0135g00160.t01	Wine grape	nucleus	7.41	18.82

Protein Annotations

EntrezGene:100233041	wikigene:100233041	Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	ProteinID:ABW34262
ProteinID:ABW34262.1	EMBL:AM460223	ProteinID:CAN61381	ProteinID:CAN61381.1	ProteinID:CCB43682	ProteinID:CCB43682.1
EMBL:EU088418	UniProt:F6GU18	EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841
InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	EntrezGene:LOC100233041	wikigene:LOC100233041	PFAM:PF00092
PFAM:PF14624	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF97
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	SignalP:SignalP-noTM	TIGR:TC52461
UniParc:UPI00015C80E1	ArrayExpress:VIT_06s0004g02630	EnsemblPlantsGene:VIT_06s0004g02630	EnsemblPlants:VIT_06s0004g02630.t01	InterPro:VWF_A	unigene:Vvi.7802
InterPro:Vwaint_dom	RefSeq:XP_002285265	RefSeq:XP_002285265.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:3261439..3266021

Molecular Weight (calculated)

79225.1 Da

IEP (calculated)

8.285

GRAVY (calculated)

-0.298

Length

729 amino acids

Sequence
(BLAST)

001: MGSKWRKAKL ALGLNLCVYV PQTLEDSSPS MDVGRRYSDA VLLSPSLSPQ SRSSDCHPAM PTTPTPSSSG LRLSKHGTKS SKKTCAICLN TMKPGQGHAI
101: FTAECSHAFH FHCITSNVKH GSQSCPVCRA KWKEIPFQSP ASDLAHGRAR INPVDWGHDD AWMTVLRQLP SPRQDASRHI SSLFHAHEPA VFDDDEVLDH
201: QPESTERSSS TRDIDNNSIG AIEVKTYPEV SAVPRSTSHN NFTVLIHLKA PLTSGRQNSG TNQTNMQPTS QSCRAPVDLV TVLDVSGSMA GTKLALLKRA
301: MGFVIQSLGP CDRLSVISFS STARRLFPLR RMTDTGRQQA LQAVNSLVSN GGTNIAEGLR KGAKVMLDRK WKNPVSSIIL LSDGQDTYTV CSPGGAHSRT
401: DYSLLLPFSI HRNGGTGFQI PVHAFGFGTD HDATSMHAIS ETSGGTFSFI EAEGVIQDAF AQCIGGLLSV VVQELRVGVE CVHPSLQLSS IKAGSYHTSV
501: TPDARTGFID VGDLYAEEER DFLVNIDIPI NGCGDEMSLF KVRCVYRDPI TKELVKCGEA DEVKIQRPEI ARQVVVSMEV DRQRNRLRAA EAMVEARAAA
601: ERGDLTSAVA VLESCRRALS ETVSARAGDR LCVALGAELK EMQERMANRR IYEASGRAYV LSGLSSHSWQ RATARGDSTD SATLLQAYQT PSMVDMLTRS
701: QTMFVSSGAP SPHPPIRPAR SFPARPLPR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.