Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plasma membrane 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g069470.2.1 | Tomato | plastid | 60.34 | 59.32 |
| PGSC0003DMT400054479 | Potato | plastid | 60.06 | 59.04 |
| VIT_13s0019g04440.t01 | Wine grape | endoplasmic reticulum | 45.26 | 44.37 |
| VIT_06s0004g02630.t01 | Wine grape | mitochondrion, nucleus | 45.4 | 43.35 |
| VIT_07s0205g00030.t01 | Wine grape | nucleus | 26.01 | 27.59 |
| VIT_18s0001g08100.t01 | Wine grape | plastid | 28.88 | 26.55 |
| VIT_00s0475g00020.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 18.1 | 24.32 |
| VIT_19s0135g00160.t01 | Wine grape | nucleus | 6.03 | 14.63 |
| VIT_15s0024g01790.t01 | Wine grape | nucleus | 5.89 | 14.29 |
Protein Annotations
| EntrezGene:100266793 | wikigene:100266793 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:AM447766 | ProteinID:CAN69721 |
| ProteinID:CAN69721.1 | ProteinID:CCB46497 | ProteinID:CCB46497.1 | UniProt:F6H2Q5 | EMBL:FN595230 | InterPro:IPR001841 |
| InterPro:IPR002035 | InterPro:IPR013083 | InterPro:IPR036465 | EntrezGene:LOC100266793 | wikigene:LOC100266793 | PFAM:PF00092 |
| PFAM:PF14624 | PFAM:PF17123 | PFscan:PS50089 | PFscan:PS50234 | PANTHER:PTHR10579 | PANTHER:PTHR10579:SF97 |
| SMART:SM00184 | SMART:SM00327 | SUPFAM:SSF53300 | SUPFAM:SSF57850 | UniParc:UPI00021089CA | ArrayExpress:VIT_00s0125g00180 |
| EnsemblPlantsGene:VIT_00s0125g00180 | EnsemblPlants:VIT_00s0125g00180.t01 | InterPro:VWF_A | InterPro:Vwaint_dom | RefSeq:XP_002271188 | RefSeq:XP_002271188.2 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | InterPro:vWFA_dom_sf | : | : |
Description
No Description!
Coordinates
chrUn:-:1614859..1617684
Molecular Weight (calculated)
75423.7 Da
IEP (calculated)
6.282
GRAVY (calculated)
-0.174
Length
696 amino acids
Sequence
(BLAST)
(BLAST)
001: MANTGALTSK SISGLGYKFF SFGALFICYN CSAIVLLKTC AICLGNLKTG QGQAIFTAEC SHSFHFNCIA SSVRHGNQLC PICRSKWRDV PFQAPANIGD
101: PQCNGMGQAR VSPYHPPPED FHGQTPCNLQ PQSPQSPEPR HFSDDEPLVV NSAESTDPTS LVSLSRPQLV TVKALPELPA ISASESFRTF AVLVGIKAPA
201: LLDDAHLLDR APIDLVAVLD VSGSMAGSKL SLLKRAVCFL IQNLGPSDRL SIVSFSSTAR RIFPLRRMSD NGREAAGLAI NSLTSSGGTN IVEGLKKGVR
301: VLEERSEQNP VASIILLSDG KDTYNCDNVN RRQTSHCASS NPRQVLEYLN LLPASICPRN RESGDEGRQA IIPVHTFGFG SDHDSTAMHA ISDESGGTFS
401: FIESVATVQD AFAMCIGGLL SVVAQELRLT VKSVSPGVHI ESIPSGKYLS EICDQGQQGV IDVGDLYAEE GKEFLIYLTV PELSSAEGEE RVKRTTLLDV
501: MCSYKDSVSK EVVQVECERV EIRRPEVLSP MDMIVCLEVD RQRNRLWVAE GIAEAQRMAE TGNLEGAKAV LAHRRSTLLS SASAQAGDGL CNWLESELRE
601: IRQRMASMEL YEQTGRAYVL SGLSSHSWQR ATTRGDSTTQ ITLLSRECGD SSTSGVIGYE TPSMVSMVTK SQTLNLTPAQ QSRRLNKSCS FNPRSG
101: PQCNGMGQAR VSPYHPPPED FHGQTPCNLQ PQSPQSPEPR HFSDDEPLVV NSAESTDPTS LVSLSRPQLV TVKALPELPA ISASESFRTF AVLVGIKAPA
201: LLDDAHLLDR APIDLVAVLD VSGSMAGSKL SLLKRAVCFL IQNLGPSDRL SIVSFSSTAR RIFPLRRMSD NGREAAGLAI NSLTSSGGTN IVEGLKKGVR
301: VLEERSEQNP VASIILLSDG KDTYNCDNVN RRQTSHCASS NPRQVLEYLN LLPASICPRN RESGDEGRQA IIPVHTFGFG SDHDSTAMHA ISDESGGTFS
401: FIESVATVQD AFAMCIGGLL SVVAQELRLT VKSVSPGVHI ESIPSGKYLS EICDQGQQGV IDVGDLYAEE GKEFLIYLTV PELSSAEGEE RVKRTTLLDV
501: MCSYKDSVSK EVVQVECERV EIRRPEVLSP MDMIVCLEVD RQRNRLWVAE GIAEAQRMAE TGNLEGAKAV LAHRRSTLLS SASAQAGDGL CNWLESELRE
601: IRQRMASMEL YEQTGRAYVL SGLSSHSWQR ATTRGDSTTQ ITLLSRECGD SSTSGVIGYE TPSMVSMVTK SQTLNLTPAQ QSRRLNKSCS FNPRSG
001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR
Arabidopsis Description
Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.