Factsheet for VIT_00s0475g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36665	Soybean	nucleus	66.99	63.09
KRH11654	Soybean	nucleus, plastid	66.6	62.39
KRH51230	Soybean	nucleus	58.49	58.49
PGSC0003DMT400070011	Potato	nucleus	57.92	56.6
Solyc04g015280.2.1	Tomato	cytosol, nucleus, plastid	57.14	55.64
GSMUA_Achr9P22360_001	Banana	plastid	41.31	52.84
Os09t0298500-01	Rice	nucleus	53.09	51.69
TraesCS5A01G178300.1	Wheat	mitochondrion	52.32	51.42
TraesCS5B01G176000.2	Wheat	mitochondrion	52.12	51.23
Zm00001d020013_P001	Maize	cytosol	51.54	50.76
Bra024913.1-P	Field mustard	mitochondrion	49.81	49.43
CDY17702	Canola	mitochondrion	36.1	48.57
OQU89212	Sorghum	cytosol	51.74	47.94
TraesCS5D01G182800.1	Wheat	cytosol, plastid	52.32	47.71
CDX77800	Canola	nucleus	50.19	45.77
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	27.03	19.2
VIT_07s0205g00030.t01	Wine grape	nucleus	23.36	18.45
VIT_00s0125g00180.t01	Wine grape	plasma membrane	24.32	18.1
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	24.71	18.03
VIT_18s0001g08100.t01	Wine grape	plastid	24.71	16.91
VIT_19s0135g00160.t01	Wine grape	nucleus	7.72	13.94
VIT_15s0024g01790.t01	Wine grape	nucleus	7.53	13.59

Protein Annotations

EntrezGene:100253188	wikigene:100253188	Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EMBL:AM486656
ProteinID:CAN66503	ProteinID:CAN66503.1	ProteinID:CBI25860	ProteinID:CBI25860.3	UniProt:D7T5S6	EMBL:FN595551
InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	EntrezGene:LOC100253188	wikigene:LOC100253188
PFAM:PF13519	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR10579	PANTHER:PTHR10579:SF47	SMART:SM00184
SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0001BE2DCA	ArrayExpress:VIT_00s0475g00020	EnsemblPlantsGene:VIT_00s0475g00020	EnsemblPlants:VIT_00s0475g00020.t01
InterPro:VWF_A	RefSeq:XP_002269690	RefSeq:XP_002269690.2	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:29964973..29968208

Molecular Weight (calculated)

57139.1 Da

IEP (calculated)

7.115

GRAVY (calculated)

-0.196

Length

518 amino acids

Sequence
(BLAST)

001: MVTACGSFSR RQSLVDPVLG DTSADATIAT ATAAVCFCEL WCLQISSSPK WGGNVSENAA DEAESCNALL TKNLCAICLD PLSYSTGTSP GPAIFTAQCS
101: HAFHFACISS NVRHGSVTCP ICRAHWTQLP RNLNPPPCSL AGNQTDPILR ILDDSIANFR VHRRSFLRSA RYDDDDPIEP DHSPNHPRLH LSLIPLPLTH
201: PTFHPYTLNN AFSYLSPLQN LTSSSSLLPT PEHYSATGQT LYHRAYLSVK LAHQQATDLV LVASPNGPHL RLLKQSMALV VFSLRPVDRL AIVTYSSAAA
301: RVFPLRRMTS YGKRTALQVI DRLFYMGQAD PIEGLKKGIK ILEDRAHKNP QSCILHLSDS PTRSYHAMNM QVPIPIHRFH VGFGFGASNG FVMHEFEEFL
401: ARLLGGVIRD IQLRIGDDGR IIRLGELRGG EERRIPLDMG DCEHVCVGYS YMEGGIDDCI RTGETVVCAE DKTETSESAE VGGGDVSLGG RTSSVESWDY
501: HDPYMARRWA KHLHGYRL

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.