Factsheet for GSMUA_Achr9P22360_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0475g00020.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	52.84	41.31
KRH36665	Soybean	nucleus	50.37	37.09
Os09t0298500-01	Rice	nucleus	48.64	37.03
Zm00001d020013_P001	Maize	cytosol	47.65	36.69
TraesCS5B01G176000.2	Wheat	mitochondrion	47.65	36.62
TraesCS5A01G178300.1	Wheat	mitochondrion	47.65	36.62
KRH11654	Soybean	nucleus, plastid	49.63	36.35
KRH51230	Soybean	nucleus	45.68	35.71
Solyc04g015280.2.1	Tomato	cytosol, nucleus, plastid	45.68	34.77
OQU89212	Sorghum	cytosol	47.9	34.7
PGSC0003DMT400070011	Potato	nucleus	45.19	34.53
TraesCS5D01G182800.1	Wheat	cytosol, plastid	47.65	33.98
Bra024913.1-P	Field mustard	mitochondrion	38.52	29.89
CDX77800	Canola	nucleus	38.27	27.29
CDY17702	Canola	mitochondrion	23.7	24.94
GSMUA_Achr11P...	Banana	mitochondrion	22.72	14.72
GSMUA_Achr5P20480_001	Banana	mitochondrion	22.96	14.67
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	22.47	14.22
GSMUA_Achr6P36520_001	Banana	plastid	23.7	13.73
GSMUA_Achr5P14740_001	Banana	mitochondrion	22.47	13.15
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	23.21	12.84
GSMUA_Achr4P22090_001	Banana	nucleus	21.98	12.45
GSMUA_Achr7P01890_001	Banana	mitochondrion	21.23	12.04
GSMUA_Achr11P...	Banana	mitochondrion	15.31	11.52
GSMUA_Achr2P11780_001	Banana	golgi	13.33	11.44
GSMUA_Achr4P06340_001	Banana	mitochondrion	4.44	9.38

Protein Annotations

EnsemblPlants:GSMUA_Achr9P22360_001	EnsemblPlants:GSMUA_Achr9T22360_001	EnsemblPlantsGene:GSMUA_Achr9G22360_001	Gene3D:3.40.50.410	InterPro:IPR036465	InterPro:vWFA_dom_sf
PANTHER:PTHR10579	PANTHER:PTHR10579:SF47	SEG:seg	SUPFAM:SSF53300	UniParc:UPI000295B6C7	UniProt:M0U2J5
MapMan:35.2	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G22360_001]

Coordinates

chr9:+:27449262..27450558

Molecular Weight (calculated)

44744.5 Da

IEP (calculated)

9.819

GRAVY (calculated)

-0.128

Length

405 amino acids

Sequence
(BLAST)

001: MAVPILPATK RSSQHNACML FTSCALHRMS GMAVLHAPSA EHNGHSSHVS SPRPPLATLT PSSASLMTRL PLPALTADHF SVPPATMMMT LLSLKQQLKP
101: ATLAFTLPSF LSSVDVLPQY NTLPNGRKRA YLSVKLSQQQ ATDLILVASP NGPHLRLLKQ SMTLVVFSLR PMDRLAIVTY STTATRAFPL RRMSSQGKRA
201: ALQVIDRIFY LGEAVPAEGL RKGLKILEDR THHNPLACIL HLSDSPTQSY VCRDLQFPIP IHRFHIGFGF GMSSGFVMHE FEEFLARLLG GMIRETQVRI
301: GAEGGRVLLG ELRGGEERRI PVNSIDDCGY LAVSYSYVEG GAEQRLSTGE VVLGTEMKND QNDPQGEIEA IDLTVRGRSN HVERWGYLDP FMARRWAKHL
401: HGHKA

Best Arabidopsis Sequence Match ( AT2G38970.1 )
(BLAST)

001: MGTRWRRMKL ALGLNLCTYL PRTLEESPTP LNSTERLSDV ALLSPLNWPM TPTPSSHGLK LSRNSSKSSK TCSICLNKMK EGGGHALFTA ECSHSFHFHC
101: IASNVKHGNQ VCPVCRAKWK EIPMQHPSFD LPYLFARSYN NDAAISLVHR LPRSRGVMNQ GRGLAPEPSM FDDDERLEQQ LVFSGKSYSD ALENNHPVRM
201: MDLKIYPEVS AVPRADSREK FDVLVHLRAA AMVTGNANSL NNQISRYPRA PVDLVTVLDI SGSMAGTKLA LLKRAMGFVI QNLGSNDRLS VIAFSSTARR
301: LFPLTKMSDA GRQRALQAVN SVVANGGTNI AEGLRKGVKV MEDRRDKNPV ASIILLSDGR DTYTMNQADP NYKLLLPLSM HGCESKRFQI PVHSFGFGSD
401: HDASLMHSVS ETSGGTFSFI ESESVIQDAL AQCIGGLLSV AVQELRLEIE GMCSDVHLSS IKAGSYQSLV SGDGRSGCVD IGDLYADEER DFLISVNIPP
501: QKDGNETPLL KMRCVYKDLL TKEIVTLQSH MLKIQRPETV GQEVVVSIEV DRQRNRFLAA EAMVKARALA EREDLAAGVT AIQNFRVALA ETVSAKSGDG
601: FCVALDRELK EMQERMASRH VYEVSGRAYI LSGLSSHSWQ RATSRGESGD GSSFVQAYYQ TPSMVEMLHR SQATSHHHRL IQPLFASQPK PR

Arabidopsis Description

Zinc finger (C3HC4-type RING finger) family protein [Source:UniProtKB/TrEMBL;Acc:F4IU12]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.