Factsheet for Bra024913.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17702	Canola	mitochondrion	68.39	92.73
CDX77800	Canola	nucleus	93.87	86.27
VIT_00s0475g00020.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	49.43	49.81
KRH11654	Soybean	nucleus, plastid	51.72	48.82
KRH36665	Soybean	nucleus	51.34	48.73
KRH51230	Soybean	nucleus	44.64	44.98
Os09t0298500-01	Rice	nucleus	45.79	44.92
TraesCS5A01G178300.1	Wheat	mitochondrion	44.06	43.64
Zm00001d020013_P001	Maize	cytosol	43.87	43.54
TraesCS5B01G176000.2	Wheat	mitochondrion	43.87	43.45
PGSC0003DMT400070011	Potato	nucleus	43.68	43.02
Solyc04g015280.2.1	Tomato	cytosol, nucleus, plastid	43.49	42.67
TraesCS5D01G182800.1	Wheat	cytosol, plastid	44.25	40.67
OQU89212	Sorghum	cytosol	42.53	39.71
GSMUA_Achr9P22360_001	Banana	plastid	29.89	38.52
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	21.84	18.66
Bra002456.1-P	Field mustard	mitochondrion, plastid	24.71	18.43
Bra005066.1-P	Field mustard	mitochondrion	22.8	18.14
Bra020234.1-P	Field mustard	mitochondrion	24.14	18.13
Bra024408.1-P	Field mustard	plastid	22.8	16.81
Bra030218.1-P	Field mustard	nucleus	21.26	16.52
Bra017859.1-P	Field mustard	plastid	19.73	16.3
Bra031849.1-P	Field mustard	plastid	22.03	16.24
Bra040498.1-P	Field mustard	plastid	22.41	16.07
Bra018663.1-P	Field mustard	nucleus	21.26	8.42

Protein Annotations

EnsemblPlants:Bra024913.1	EnsemblPlants:Bra024913.1-P	EnsemblPlantsGene:Bra024913	Gene3D:3.30.40.10	Gene3D:3.40.50.410	InterPro:IPR001841
InterPro:IPR013083	InterPro:IPR036465	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:vWFA_dom_sf	PANTHER:PTHR10579
PANTHER:PTHR10579:SF47	PFAM:PF13639	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF53300
SUPFAM:SSF57850	UniParc:UPI000253FA17	UniProt:M4E807	MapMan:35.1	:	:

Description

AT2G38970 (E=3e-014) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA06:-:24231421..24233162

Molecular Weight (calculated)

57838.4 Da

IEP (calculated)

8.409

GRAVY (calculated)

-0.211

Length

522 amino acids

Sequence
(BLAST)

001: MGMGRTTSKL RKAAKRLVLA ACRSLSLLPL SSRGSTAVIK PENVYLPHHH EVHKEAIDKV DSTHATSTIL CAICLEPLSH CDDNSPSEAT FTGQCSHSFH
101: FSCIASNVRH GSVTCPVCRA HWTHLPPPSF PHLSERQLDD PVLRILDDSI ATSRVQRRSL LRSARYDDDD PIAPPHSNTS YPRLDFSLTP LTVSPNLVSY
201: PCCFHPLQGA YSPLQMCRTS VLPLPEDYHC VCTSLSTRSA YLSVKLKDPQ PIDLVLVASP SGPHSRLLKQ AMILVTSSLR PVDRLAIVTY SCVAARVFAL
301: RRMTSCGKRA ALRVIDRLFY TGQTDPSQGI LKGIKVLKDR AYKNPQCSIL HISSSSYYPN SVMHRGVMVH GFHVGLGSET WNGFVLHKLE EFLKNVLGVV
401: ASDIQLRIGM EGNVVKVGEL RGGEERQVLL DLGGHVSVRL CYSYVEGDSN ECIRRRGETT LSLVEDKEGI VTAGDCESAG ARDDDYMNSN SVRRSINTGA
501: WDYHDPFMAR RWAKRLHETV NL

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.