Factsheet for Bra024408.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001896.1-P
Bra001929.1-P
Bra003173.1-P
Bra003174.1-P
Bra004879.1-P
Bra007052.1-P
Bra007233.1-P
Bra012650.1-P
Bra018049.1-P
Bra021379.1-P
Bra023780.1-P
Bra026236.1-P
Bra027479.1-P
Bra028351.1-P
Bra028357.1-P
Bra029904.1-P
Bra032616.1-P
Bra033258.1-P
Bra033292.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65683.1	Bra032616.1-P	AT1G01050.1	21798944
AT5G65683.1	Bra033292.1-P	AT1G01050.1	21798944
AT5G65683.1	Bra033258.1-P	AT1G01510.1	21798944
AT5G65683.1	Bra004879.1-P	AT2G44950.1	21798944
AT5G65683.1	Bra040332.1-P	AT2G44950.1	21798944
AT5G65683.1	Bra021379.1-P	AT3G03000.1	21798944
AT5G65683.1	Bra001896.1-P	AT3G22960.1	21798944
AT5G65683.1	Bra023780.1-P	AT3G22960.1	21798944
AT5G65683.1	Bra001929.1-P	AT3G24140.1	21798944
AT5G65683.1	Bra028351.1-P	AT3G24140.1	21798944
AT5G65683.1	Bra028357.1-P	AT3G24140.1	21798944
AT5G65683.1	Bra018049.1-P	AT3G48550.1	21798944
AT5G65683.1	Bra029904.1-P	AT3G48550.1	21798944
AT5G65683.1	Bra003173.1-P	AT3G54170.1	21798944
AT5G65683.1	Bra003174.1-P	AT3G54170.1	21798944
AT5G65683.1	Bra007052.1-P	AT3G54170.1	21798944
AT5G65683.1	Bra007233.1-P	AT3G56270.1	21798944
AT5G65683.1	Bra026236.1-P	AT4G17220.1	21798944
AT5G65683.1	Bra012650.1-P	AT4G17680.1	21798944
AT5G65683.1	Bra027479.1-P	AT5G43280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08765	Canola	plastid	99.29	99.29
Bra031849.1-P	Field mustard	plastid	80.65	80.65
AT5G65683.1	Thale cress	peroxisome, plastid	79.38	78.38
VIT_07s0205g00030.t01	Wine grape	nucleus	44.21	47.71
KRH74431	Soybean	mitochondrion	44.77	46.62
Bra030218.1-P	Field mustard	nucleus	44.07	46.43
KRH39527	Soybean	extracellular, golgi	35.45	46.4
PGSC0003DMT400078676	Potato	plastid	45.76	45.57
KRH45468	Soybean	cytosol, peroxisome	25.85	45.41
Solyc02g091710.2.1	Tomato	plastid	45.9	45.26
Bra017859.1-P	Field mustard	plastid	40.11	44.94
KRH75634	Soybean	nucleus	37.57	41.05
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	36.16	37.16
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	37.29	36.07
TraesCS2A01G045100.1	Wheat	peroxisome	38.7	36.05
GSMUA_Achr7P01890_001	Banana	mitochondrion	36.3	35.99
Bra040498.1-P	Field mustard	plastid	37.01	35.99
GSMUA_Achr5P14740_001	Banana	mitochondrion	35.17	35.98
Zm00001d024940_P001	Maize	peroxisome	37.43	35.96
TraesCS2D01G043700.1	Wheat	peroxisome	38.14	35.39
TraesCS2B01G057300.1	Wheat	peroxisome	38.42	35.32
GSMUA_Achr4P22090_001	Banana	nucleus	35.45	35.1
Zm00001d004553_P001	Maize	peroxisome	36.86	34.8
OQU81040	Sorghum	peroxisome	32.91	32.59
KRH45469	Soybean	nucleus	7.63	30.51
Bra002456.1-P	Field mustard	mitochondrion, plastid	25.71	26.0
Bra005066.1-P	Field mustard	mitochondrion	24.01	25.91
Bra020234.1-P	Field mustard	mitochondrion	25.28	25.76
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	22.18	25.7
Bra024913.1-P	Field mustard	mitochondrion	16.81	22.8
Bra018663.1-P	Field mustard	nucleus	23.31	12.51

Protein Annotations

MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	EnsemblPlantsGene:Bra024408	EnsemblPlants:Bra024408.1	EnsemblPlants:Bra024408.1-P
InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M4E6K4	PFAM:PF00092
PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF59	SMART:SM00184
SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000253F578	InterPro:VWF_A	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

AT5G65683 (E=2e-271) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA06:+:15594544..15596759

Molecular Weight (calculated)

76400.9 Da

IEP (calculated)

10.043

GRAVY (calculated)

-0.273

Length

708 amino acids

Sequence
(BLAST)

001: MVFGWRKAFC NSVSSNQQQS SSHIPTPRLR SKFGFFSNPS TPRVQSPGGS GRGSGIGCRS AASTSAANPS LPTSPKLHCR TTSNATPRTS NSSTPKLLSN
101: PSSPKSSSTH GGVSLLRATL LLNKSNNNRC GICLQRLNSG QINSTAIFTA ECSHSFHLSC AVKLDGKRCP FCSAAWNYTP RSDAESVNLE SDPGRGPEIR
201: EIKTGKSLRV YNDDETLAYS PVSLAHFNSI PESDENDDVD EEGHEFPGFF SDSSITPATF SGSIPPISGT LEVKMLPESA VVETGKRIET HVVVMKLKAC
301: LPSSSTADAI RASRPSIDLV TVLDLSSGGA SLRTVKHALR LVISLLREMD RLSIVVFSTG SKRLMPLRRM TDKGRRSARR IVDALVGIET AGGGGMSVND
401: ALKKAVKVVE DRRERNPSAS IFVLSDGQDQ PEAVLKAKLN SARVPFAVST TRFYRSEIPV HSVSIASPSA LHHAPLRDAF TERIASLLNV VLHDVKLNLG
501: LVSGSPLTEI SAVYSLTGRS GSFGSGSAVI VGDLFAEEER EYLVEFKVPT SSSSGSHHVM SVRSSVVDPA TLQPLPCPKE KRFLIPRPQA VRFASSSIER
601: LRNTHLVCRA VAGSRKLIER DDFAGAYQLL TTARSNASDD SLMSLDAELA ELSRLKPRIG LANRTEEKPE QLTPTSAWKA AEKLAKVAIM RKHLNRVSDM
701: HGLENARF

Best Arabidopsis Sequence Match ( AT5G65683.1 )
(BLAST)

001: MVFGWRKAFC TSVSSNQDKP QQHSSLHTTD PPIPTPRFRS KFGFLSNPST PRLRSRGGSG TGCRSSASTS VTIPSLPTSP KLHCRTTSNA TPRTSNSSSP
101: KFFSNPSSPK SSSSSSSQGG GGVSLLRATL LLNKSNSSRC AICLQRVNSN QSNSTAAIFT AECSHSFHLS CVNGLEDKRC PFCSAAWNHA PKSNYPAVNN
201: NFGSDPIRRP EIREIKTGKS LRVYNDDEPL AYSPVSLAQI NTIHESDEND DVEDDDDFPG FFRDSSITSD MVPSISGNLE VKLLPESAVV ETGKKKETHV
301: VIMKLKASPS PSSITDAIKA RRPSIDLVTV LDLSNGGANL QTVKHAMRSV ISLLREMDRL SIVVFSTGSK RLMPLRRMTA KGRRSARRMV DALGGMETTG
401: GVGMSVNDAL KKAVKVVEDR REKNPSTSIF VLSDGQDQPE AVLKAKLNAT RIPFVVSTTR FSRPEIPVHS VYIASPGALL HAPLRDAFTE RIASLLNVTL
501: HNVKLNLSLV NGSHLTEISS VYSLTGRLEN FGSGSVIQVG DLFAEEEREF LVELKVPTSS SGSHQVMSVQ SSIVDQMTHQ PMTCPKEKRF LIPRPQSVRY
601: VSSSIERLRN LHSMCRAVAD SRRLIEREDL SGAYQVLTTA RSNASHSDDS LRSLEVELNE LSRIKPRNSI LNRTEDKPEQ LTPTSAWRAA EKLAKVAIMR
701: KHLNRVSDMH GLENARF

Arabidopsis Description

WAVH2Probable E3 ubiquitin-protein ligase WAVH2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQX9]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.