Factsheet for Bra030712.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	87.23	98.89
AT1G08050.1	Thale cress	plastid	77.09	73.48
Bra005066.1-P	Field mustard	mitochondrion	50.74	47.26
Bra020234.1-P	Field mustard	mitochondrion	52.86	46.47
Bra002456.1-P	Field mustard	mitochondrion, plastid	52.54	45.86
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	54.5	45.68
GSMUA_Achr11P...	Banana	mitochondrion	45.99	44.96
GSMUA_Achr5P20480_001	Banana	mitochondrion	46.15	44.48
Solyc11g069600.1.1	Tomato	plastid	52.54	43.79
PGSC0003DMT400020896	Potato	mitochondrion, plastid	52.37	43.66
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	44.84	42.81
GSMUA_Achr11P...	Banana	mitochondrion	36.66	41.64
Zm00001d017247_P002	Maize	mitochondrion	46.97	41.24
Zm00001d051119_P001	Maize	nucleus	46.32	41.13
OQU85324	Sorghum	mitochondrion	46.97	40.83
Os02t0619600-01	Rice	mitochondrion	47.3	40.76
OQU93256	Sorghum	mitochondrion	46.48	40.69
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	47.3	40.59
Zm00001d027622_P001	Maize	mitochondrion	45.83	40.46
TraesCS6B01G254400.1	Wheat	mitochondrion	46.97	40.42
TraesCS6D01G207700.2	Wheat	mitochondrion	46.97	40.42
TraesCS6A01G227300.1	Wheat	mitochondrion	46.81	40.23
HORVU4Hr1G084340.1	Barley	mitochondrion	46.48	40.17
TraesCS2B01G382300.1	Wheat	mitochondrion	45.66	40.14
TraesCS4B01G344100.1	Wheat	mitochondrion	46.32	40.03
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	45.5	39.94
TraesCS5A01G512800.2	Wheat	mitochondrion	46.15	39.89
TraesCS2D01G361900.1	Wheat	mitochondrion	45.17	39.88
Os03t0142500-01	Rice	plasma membrane	45.17	39.77
TraesCS4D01G339200.1	Wheat	mitochondrion	45.99	39.75
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	45.17	39.43
Os04t0508800-01	Rice	plasma membrane	45.01	38.84
Zm00001d025825_P001	Maize	mitochondrion	43.7	37.93
OQU81931	Sorghum	mitochondrion	43.21	37.88
GSMUA_Achr2P11780_001	Banana	golgi	24.88	32.2
Bra018663.1-P	Field mustard	nucleus	68.9	31.92
Bra017859.1-P	Field mustard	plastid	23.9	23.1
Bra040498.1-P	Field mustard	plastid	27.5	23.08
Bra030218.1-P	Field mustard	nucleus	24.71	22.47
Bra031849.1-P	Field mustard	plastid	25.86	22.32
Bra024408.1-P	Field mustard	plastid	25.7	22.18
Bra024913.1-P	Field mustard	mitochondrion	18.66	21.84

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EnsemblPlantsGene:Bra030712	EnsemblPlants:Bra030712.1	EnsemblPlants:Bra030712.1-P
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:IPR001841	InterPro:IPR002035
InterPro:IPR013083	InterPro:IPR036465	UniProt:M4EPJ2	PFAM:PF00092	PFAM:PF14624	PFAM:PF17123
PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF97	SMART:SM00184	SMART:SM00327
SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI0002546B93	InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:	:

Description

AT1G08050 (E=2e-225) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA08:+:20689428..20691450

Molecular Weight (calculated)

67141.8 Da

IEP (calculated)

6.577

GRAVY (calculated)

-0.317

Length

611 amino acids

Sequence
(BLAST)

001: MENPNNSREA TLPDPSSPPP PPRSTSSSGL PFSKNKCAIC LDEIRKEDGK AIFTAECSHS FHFDCITSNV KHGNRICPLC RTEWKQVPLF VDNRVPAPTF
101: PVQTGFEDDE PLVVQNGQPS GVAAAHRQAL EIKLLPQVSA VEKSVARGDF AVLVHLKAAE GVSDDNDRPE TRAPLDLIAV LDVSGSMEGT KLHLLKNAVA
201: FVIDNLGERD RLSVIAFSSG ARRLFPLRLM SERGKRQAIQ AVNTLVAGGG TNIAEGLKIG ARVIADRRWK NPVSGMMLLS DGQDNFTLSR SYSHSHSQVR
301: LRADYESLLP SSRIPIHTFG FGVDHDAELM HTISQVSSGT FSFIETETVI RDAFAQCIGG LLSVVVLDQV VEIECLHEEG LKISSIKAGS YRSRVSSDGR
401: TAKIDVGDMY AEEERDFLVI LEIPRCEDES MPLVKIRCVY KDAVSREIVR VESEELSIQR PREMTGEEVV SVEVDRQLNR FLVSEAMSEA RVLADGGDLE
501: GAVGVLRNRE RELAETQSAR ARDGLCLSLS SELGALQERM SSRRMYERSG RAYAFSSMSS HSAQRATARW PVCGSAAPQA YQTSSMARMV SRSQELGIKT
601: PKPSPARRDR S

Best Arabidopsis Sequence Match ( AT1G08050.1 )
(BLAST)

001: MENPNNLRES KSHLNLNECL TLPKTLDPSS PSPSDASRSS VDPNRPDSSS SRPGSTPSSS GLRFSKGRCA ICLYEIRKED GKAIFTAECS HSFHFDCITS
101: NVKHGNRICP LCRTQWKQVP LCDVDSVPTF VAQRGFEDDE PLPQGDTQIH SDGHRSDHQA LEIKLFPEVS ALAKPVSRAD FAVLVHLKAE GVSDDARRAR
201: APLDLITVLD VSGSMDGVKM ELMKNAMSFV IQNLGETDRL SVISFSSMAR RLFPLRLMSE TGKQAAMQAV NSLVADGGTN IAEGLKIGAR VIEGRRWKNP
301: VSGMMLLSDG QDNFTFSHAG VRLRTDYESL LPSSCRIPIH TFGFGSDHDA ELMHTISEVS SGTFSFIETE TVIQDAFAQC IGGLLSVVIL EQVVEIECIH
401: EQGLKISSIK AGSYRSRIAP DARTATIDVG DMYAEEERDF LVLLEIPCCD NGSGESESLS LLKVRCVYKD PVTKEIVHVE SGELSIQRPM KLTGKEVVSI
501: EVDRQLNRFL VSQAMSEARV LADGGDLSGA VGILRNRERE LSETPSAQSS DRLCQSLSSE LSALQERMTS RRMYRTSGRA YAFSSMSSHS AQRATARGDS
601: TQGFSPVQAY QTSPMARMVT RSQLLVLESP TKPSPGRGEQ S

Arabidopsis Description

T6D22.13 [Source:UniProtKB/TrEMBL;Acc:Q9LN03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.