Factsheet for Bra002456.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31517	Canola	extracellular, mitochondrion, plastid	84.0	98.33
CDY52708	Canola	extracellular, mitochondrion, plastid	84.14	97.84
Bra020234.1-P	Field mustard	mitochondrion	88.29	88.92
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	85.0	84.52
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	65.14	62.55
PGSC0003DMT400020896	Potato	mitochondrion, plastid	61.43	58.66
Solyc11g069600.1.1	Tomato	plastid	61.43	58.66
Bra005066.1-P	Field mustard	mitochondrion	53.86	57.47
GSMUA_Achr5P20480_001	Banana	mitochondrion	49.57	54.73
GSMUA_Achr11P...	Banana	mitochondrion	48.14	53.92
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	49.29	53.91
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	45.86	52.54
GSMUA_Achr11P...	Banana	mitochondrion	39.71	51.67
Os02t0619600-01	Rice	mitochondrion	50.29	49.65
Zm00001d017247_P002	Maize	mitochondrion	49.29	49.57
TraesCS2B01G382300.1	Wheat	mitochondrion	48.71	49.06
TraesCS2D01G361900.1	Wheat	mitochondrion	48.43	48.99
Zm00001d051119_P001	Maize	nucleus	48.14	48.98
OQU85324	Sorghum	mitochondrion	49.14	48.93
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	49.57	48.74
TraesCS6D01G207700.2	Wheat	mitochondrion	49.14	48.45
TraesCS6A01G227300.1	Wheat	mitochondrion	49.14	48.38
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	48.0	48.28
TraesCS6B01G254400.1	Wheat	mitochondrion	48.86	48.17
Os04t0508800-01	Rice	plasma membrane	48.71	48.16
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	47.57	47.57
Zm00001d027622_P001	Maize	mitochondrion	46.14	46.68
TraesCS4B01G344100.1	Wheat	mitochondrion	46.71	46.25
TraesCS5A01G512800.2	Wheat	mitochondrion	46.71	46.25
TraesCS4D01G339200.1	Wheat	mitochondrion	46.29	45.83
OQU81931	Sorghum	mitochondrion	45.57	45.77
OQU93256	Sorghum	mitochondrion	45.57	45.7
HORVU4Hr1G084340.1	Barley	mitochondrion	46.0	45.54
Os03t0142500-01	Rice	plasma membrane	45.14	45.53
Zm00001d025825_P001	Maize	mitochondrion	44.86	44.6
GSMUA_Achr2P11780_001	Banana	golgi	28.29	41.95
Bra017859.1-P	Field mustard	plastid	24.43	27.06
Bra040498.1-P	Field mustard	plastid	28.0	26.92
Bra030218.1-P	Field mustard	nucleus	25.71	26.79
Bra024408.1-P	Field mustard	plastid	26.0	25.71
Bra031849.1-P	Field mustard	plastid	25.29	25.0
Bra024913.1-P	Field mustard	mitochondrion	18.43	24.71
Bra018663.1-P	Field mustard	nucleus	44.57	23.65

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EnsemblPlantsGene:Bra002456	EnsemblPlants:Bra002456.1	EnsemblPlants:Bra002456.1-P
InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465	UniProt:M4CE25	PFAM:PF00092
PFAM:PF13639	PFAM:PF14624	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579	PANTHER:PTHR10579:SF97
SMART:SM00184	SMART:SM00327	SUPFAM:SSF53300	SUPFAM:SSF57850	SignalP:SignalP-noTM	UniParc:UPI00025442B5
InterPro:VWF_A	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf

Description

AT5G60710 (E=2e-281) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA10:-:9453458..9457438

Molecular Weight (calculated)

76003.9 Da

IEP (calculated)

9.266

GRAVY (calculated)

-0.242

Length

700 amino acids

Sequence
(BLAST)

001: MGSKWRKAKL ALGLNLCLYV PKTLDESSSL SRRSNDAVSL SPVTVPRPTT PTPSSSGLRL PRSISISSSK KTCAICLTAM KAGQGHAIFT AECSHSFHFH
101: CITTNVQHGN QFCPVCRAKW NEVPLQIPNA KSKPIVRPRD DAWMTIPPRR SSQNQPSPRP ERLRPVSMIF NNEPAVFNDD EALEPQHHNP AESTKPGGVS
201: GKLEVKTYPE ISEVVRSVSF KDFSVLINLK APPVSSSSSS SRAPVDLVTV LDVSGSMAGT KLALLKRAMG FVIQNLGPFD RLSVISFSST SRRSFPLRLM
301: TETGKQEALQ AVNSLVSNGG TNIAEGLMKG AKVLIDRRFK NSVSSIVLLS DGQDTYTMTS PTGSNTKGTD YKTLLPKEVN RIPVHAFGFG ADHDASLMHS
401: VAENSGGTFS FIESETVIQD AFAQCIGGLL SVMVQELRVK IECVHPMLKI GSVKAGSYRF DSRTGSIEVG DLYAEEERNF LVNLDVPVVD GVLDTMSLLK
501: VGCVYREPVT KETVDLSNSG EVKILRPVLE GRPVVSVEVD RQKIRLRAAE AISEARVLAE RGDLTGAVSV LETCREVLSE TVSGRAGDAL CVSLCAELKE
601: TQERMASRQV YESSGRAYVL AGLSSHSWQR ATARGDMSDT TTMSYQTQSM VDMVNLSQTM TFGCPRASSN ANSSSNPNPS PSARRKLRQA LTFPARPRAR

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [mitochondrion,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.