Factsheet for GSMUA_Achr11P02420_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20480_001	Banana	mitochondrion	69.89	59.31
GSMUA_Achr11P...	Banana	mitochondrion	64.87	55.84
GSMUA_Achr1P03470_001	Banana	mitochondrion, plastid	55.58	46.72
CDY31517	Canola	extracellular, mitochondrion, plastid	50.37	45.32
CDX74871	Canola	mitochondrion	50.93	44.92
CDX91506	Canola	mitochondrion	50.37	44.57
CDY52708	Canola	extracellular, mitochondrion, plastid	49.81	44.52
VIT_06s0004g02630.t01	Wine grape	mitochondrion, nucleus	57.43	42.39
VIT_13s0019g04440.t01	Wine grape	endoplasmic reticulum	55.76	42.25
Bra005066.1-P	Field mustard	mitochondrion	50.56	41.46
PGSC0003DMT400059986	Potato	nucleus	55.58	41.13
Solyc05g056140.2.1	Tomato	nucleus	54.83	40.52
Bra020234.1-P	Field mustard	mitochondrion	52.04	40.29
Zm00001d017247_P002	Maize	mitochondrion	52.04	40.23
GSMUA_Achr6P36520_001	Banana	plastid	52.23	40.2
OQU85324	Sorghum	mitochondrion	52.23	39.97
AT5G60710.1	Thale cress	extracellular, mitochondrion, plastid	52.04	39.77
Bra002456.1-P	Field mustard	mitochondrion, plastid	51.67	39.71
TraesCS2B01G382300.1	Wheat	mitochondrion	51.12	39.57
TraesCS2D01G361900.1	Wheat	mitochondrion	50.74	39.45
Zm00001d051119_P001	Maize	nucleus	50.37	39.39
Os02t0619600-01	Rice	mitochondrion	51.86	39.35
TraesCS2A01G364100.2	Wheat	cytosol, mitochondrion	50.74	39.22
AT2G38970.1	Thale cress	mitochondrion	50.37	39.16
Os04t0508800-01	Rice	plasma membrane	51.49	39.12
TraesCS6D01G207700.2	Wheat	mitochondrion	51.49	39.01
HORVU2Hr1G088110.4	Barley	cytosol, mitochondrion	50.74	39.0
TraesCS6A01G227300.1	Wheat	mitochondrion	51.49	38.96
HORVU6Hr1G057680.2	Barley	cytosol, mitochondrion, nucleus	51.3	38.76
TraesCS6B01G254400.1	Wheat	mitochondrion	51.12	38.73
PGSC0003DMT400020896	Potato	mitochondrion, plastid	52.6	38.61
Solyc11g069600.1.1	Tomato	plastid	52.42	38.47
GSMUA_Achr2P11780_001	Banana	golgi	33.46	38.14
Os03t0142500-01	Rice	plasma membrane	48.88	37.9
Zm00001d027622_P001	Maize	mitochondrion	48.51	37.72
OQU93256	Sorghum	mitochondrion	48.7	37.54
TraesCS5A01G512800.2	Wheat	mitochondrion	49.26	37.48
TraesCS4D01G339200.1	Wheat	mitochondrion	49.07	37.34
OQU81931	Sorghum	mitochondrion	48.33	37.3
AT3G54780.4	Thale cress	endoplasmic reticulum, extracellular, plastid	47.21	37.24
Zm00001d025825_P001	Maize	mitochondrion	48.7	37.22
CDX95099	Canola	cytosol	38.85	37.19
CDY32819	Canola	cytosol	41.64	37.09
CDY72156	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	36.99	36.92
TraesCS4B01G344100.1	Wheat	mitochondrion	48.51	36.92
AT1G08050.1	Thale cress	plastid	43.68	36.66
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	41.64	36.66
HORVU4Hr1G084340.1	Barley	mitochondrion	47.96	36.49
CDY67781	Canola	cytosol	35.69	36.29
CDX93597	Canola	cytosol	41.82	34.99
GSMUA_Achr4P06340_001	Banana	mitochondrion	7.99	22.4
GSMUA_Achr4P22090_001	Banana	nucleus	25.09	18.88
GSMUA_Achr5P14740_001	Banana	mitochondrion	23.61	18.35
GSMUA_Achr7P01890_001	Banana	mitochondrion	24.35	18.35
Bra018663.1-P	Field mustard	nucleus	41.45	16.91
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	22.86	16.8
GSMUA_Achr9P22360_001	Banana	plastid	11.52	15.31

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.410	MapMan:35.1	EnsemblPlantsGene:GSMUA_Achr11G02420_001	EnsemblPlants:GSMUA_Achr11P02420_001	EnsemblPlants:GSMUA_Achr11T02420_001
InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR036465	UniProt:M0RNS2	PFAM:PF14624	PFAM:PF17123
PFscan:PS50089	PANTHER:PTHR10579	PANTHER:PTHR10579:SF97	SMART:SM00184	SUPFAM:SSF53300	SUPFAM:SSF57850
UniParc:UPI0002964BD0	InterPro:Vwaint_dom	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf

Description

zinc finger family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G02420_001]

Coordinates

chr11:-:1680053..1683126

Molecular Weight (calculated)

58120.2 Da

IEP (calculated)

8.077

GRAVY (calculated)

-0.243

Length

538 amino acids

Sequence
(BLAST)

001: MGSTWRKVTR ALGLNLCVQV PREMLHDDDG GSRPGGSAAG RRASVAASST TSSPAGSVGA SDFRALMPTI LLLLQSSDID LNGLVQKCAI CLGSMKAGDG
101: HALFTAECSH TFHFHCITAN VNHGNYVCPL CKATWKEIPL QAPQALGHPH HGRARVNPVV EDGQPSSFND DEPLDLQSAA ARDLRQGRPE MNVRAPVDLV
201: TVLDVSGSMA GTKLALLKRA LTVNSLVSSG GTNIAEGLKK GFKVIEERRE RNPVCSILLL TDGQDTYTLS SSGSGAQRSQ PDYKVLVPSS ILSSTAGVLQ
301: DAFAQCIGGI LSVVVQELRL GVECAHPGVR LAPINSGSYR NQLLNDARTG FIYVGDLYAD EERDFLVSVN VPFAIEEIVL LKVACVYKDP VSKDTVHLPI
401: REVRIQRPQV VSSQTPSIEV DRERNRVQAA EAMSNARAAA ERGFLSDAVS ILEEQRMASR QRYEDSGRAY VLSGLSSHSW QRATARGDST DGSSLLHSYQ
501: TPSMVEMLHR SQTLRDSPRR PAPPIQPTRS FPSRPRPI

Best Arabidopsis Sequence Match ( AT5G60710.1 )
(BLAST)

001: MGSKWRKAKV ALGLNLCLYV PKTLEDSSPP RRSDDAVSLS PVIVQRPSTP TPSSSGLRLP RSMSKSSSKK TCAICLTAMK AGQGHAIFTA ECSHSFHFQC
101: ITTNVKHGNQ ICPVCRAKWN EIPIQSPNAK PKSGVKPIGR PRDDAWMSIP PRRSSPIQYT SRPDCLRVSS IFNTEPAVFN DDEALEHQDR SAESGLDKPG
201: VTGTLEVKTY PEISEVVRSV SFKDFAVLIN LKAPTSSKSS SNPSSSSRAP VDLVTVLDVS GSMAGTKLAL LKRAMGFVIQ NLGPFDRLSV ISFSSTARRN
301: FPLRLMTETG KQEALQAVNS LVSNGGTNIA EGLKKGARVL IDRRFKNPVS SIVLLSDGQD TYTMTSPNGS RGTDYKALLP KEINGNRIPV HAFGFGADHD
401: ASLMHSIAEN SGGTFSFIES ETVIQDAFAQ CIGGLLSVVV QELCVTIECM HHLLRIGSVK AGSYRFDNGP NSRTGSIAVG DLYAEEERNF LVNLDIPIVD
501: GVSDVMSLLK VQCVYKDPVT KETVNLNNSG EVKILRPIVM TERRPVVSVE VDRQRIRLRA AEAISEARVL AERGDLTEAV SVLETCRGLL TESVSGRAGD
601: QLCVTLCAEL KEMQERMASR QVYEASGRAY VLAGLSSHSW QRATARGDMS DSTTTSYQTQ SMVDMVNLSQ TMTFGMPIAS SNSSPSGQRK LRQALSFPAK
701: PRPR

Arabidopsis Description

Retroelement pol polyprotein-like [Source:UniProtKB/TrEMBL;Acc:Q9FF49]
SUBAcon: [extracellular,plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.