Factsheet for Bra040498.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28148	Canola	plastid	92.99	99.71
AT5G49665.1	Thale cress	plastid	83.24	81.89
VIT_18s0001g08100.t01	Wine grape	plastid	56.46	54.29
Solyc04g076860.2.1	Tomato	nucleus	54.12	52.53
PGSC0003DMT400016355	Potato	nucleus	53.71	51.86
KRH72527	Soybean	nucleus	45.88	51.31
KRH16916	Soybean	nucleus	47.12	50.89
Bra030218.1-P	Field mustard	nucleus	39.29	42.56
Os04t0101800-01	Rice	cytosol, mitochondrion, peroxisome, plastid	39.15	41.36
Bra017859.1-P	Field mustard	plastid	35.58	40.98
GSMUA_Achr5P14740_001	Banana	mitochondrion	38.6	40.61
Zm00001d024940_P001	Maize	peroxisome	40.25	39.76
GSMUA_Achr4P22090_001	Banana	nucleus	38.87	39.58
GSMUA_Achr7P01890_001	Banana	mitochondrion	38.6	39.36
Zm00001d004553_P001	Maize	peroxisome	40.52	39.33
GSMUA_Achr4P20870_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	39.42	39.21
Bra031849.1-P	Field mustard	plastid	37.64	38.7
TraesCS2A01G045100.1	Wheat	peroxisome	40.11	38.42
TraesCS2D01G043700.1	Wheat	peroxisome	39.97	38.14
TraesCS2B01G057300.1	Wheat	peroxisome	40.25	38.05
Bra024408.1-P	Field mustard	plastid	35.99	37.01
OQU81040	Sorghum	peroxisome	36.26	36.92
Bra020234.1-P	Field mustard	mitochondrion	27.47	28.78
Bra002456.1-P	Field mustard	mitochondrion, plastid	26.92	28.0
Bra030712.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	23.08	27.5
Bra005066.1-P	Field mustard	mitochondrion	24.04	26.68
Bra024913.1-P	Field mustard	mitochondrion	16.07	22.41
Bra018663.1-P	Field mustard	nucleus	23.49	12.96

Protein Annotations

MapMan:26.3.1.6	Gene3D:3.30.40.10	Gene3D:3.40.50.410	EnsemblPlantsGene:Bra040498	EnsemblPlants:Bra040498.1	EnsemblPlants:Bra040498.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628
GO:GO:0009630	GO:GO:0009987	GO:GO:0016020	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0048364	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR002035	InterPro:IPR013083	InterPro:IPR036465
UniProt:M4FHC0	PFAM:PF13519	PFAM:PF17123	PFscan:PS50089	PFscan:PS50234	PANTHER:PTHR10579
PANTHER:PTHR10579:SF55	SMART:SM00184	SUPFAM:SSF53300	SUPFAM:SSF57850	UniParc:UPI000253ED8F	InterPro:VWF_A
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	InterPro:vWFA_dom_sf	:	:

Description

AT5G49665 (E=2e-305) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrScaffold000213:-:39262..41548

Molecular Weight (calculated)

79269.7 Da

IEP (calculated)

8.887

GRAVY (calculated)

-0.295

Length

728 amino acids

Sequence
(BLAST)

001: MGTGWRRAFC TTASRKSDAV APDLDKQQAG YTLNSNPSPR SCVKLAFLSG GSNSSTPRTN YSPSLGCRTT DAENPVPTAE QIPTPRSATK SPRLSLKARS
101: NPSSPRLKLS LFRNSFKFRS NCGICLNSVK TGQGTAKYTA ECSHVFHFPC VTDYVSKHGK LVCPVCNSLW KDASLLTLHG NGIEPPLENA VSIEEKRVVA
201: VATSPIAKPM PKQSHNYDDD EPLLSPRFVT IPEANENCRC EEETDVAQFK GFVVDPSPSF AVKSHEIPAT GRDFGNVQVS LLPESAVVSV GCGYETRAVA
301: LRVKAPPPLG TRGRRLLDPS QRAPVDLVVV VDVGGTMNGA KLQMVKRAMR VVISSLSSAD RLSIVSASSK RLLPLKRMTE NGKRSAGVVV DGLLCCQSSK
401: ISDGLEKAAR VLEDRRERNP IASIVLLKDG QPISSRANTN QRSTITHVGL TRFAHIEIPV TEYGFGESGG CSHAPVEEAF AKCLGGFLSV VVQDLRIQFR
501: VGSGSGPCEI AAIYLCNGQP TLVSSGSGSV RLGDLYAGEE REVLVELRIP STASMVHQVL SVRGLYKDPS TQEVVYGRDQ SLRVPQAVRS SSPSIERLRC
601: LFIMTRAVAE SRRLVEYGEC TSAHHLLTSA HALLGQSRMA EAADYTKVVE AELVEVQWRR QQLMEYESQP QQQHIQQRRG SERDTTMILV DENGEPLTPA
701: SAWRAAEKFA KVAMMKKSDL HGFENARF

Best Arabidopsis Sequence Match ( AT5G49665.1 )
(BLAST)

001: MGTGWRRAFC TTAPRNSDAA APDLDKQRTG YNLTPSPSPR SCVKLAFLSG GSNPSTPRST SSPSLRCRTA DAQTPTAEQT STPRSATKSP RLSLAAISNP
101: SSPRSPLKLS LFRNSFKFRS TCGICLNSVK TGQGTAKYTA ECSHAFHFPC IADYVRKQGK LVCPVCNSIW KDASLLVPHK NATESPLDDS VSVIQEKRVV
201: VTSSPRAKPR PKQSDYSRFY DDDEPLLSPR FVTIPEADEN CGGEEEDDVP QFKGFVVDPN PSFAVKTNEI PVNGRDFGNV QVSLLPEAAV VSVGCGYETR
301: AVALRVKAPP PLTARGGVGR RLLDPSQRAP VDLVVVVDVG GTMNGAKLQM VKRAMRLVIS SLGSADRLSI VAVVMTVPKR LLPLKRMTEH GKRSAGAVVD
401: GLLCGQGSNT SEALKKASRV LEDRRERNPV ASIVLLTDGQ GQLSKVHTNQ RSTITNVGST RFAHIEIPVT EHGFGESGGC SNAPAEEAFA KCIGGLLSVV
501: VQDLRIQIRV GSGSGPCEIS AIYLCNGRPT LVSSGSGSVR LGDLYAGEER ELLVELRVPS TATRAYQILS VRGLFKDPST QEVVYGRDQS LRVPQAVRSS
601: SSPRIERLRS LFIATRAVAE SRRLVEYGEC TSAYHLLTSA RALLGQSGTV EAAEYIKVVE AELVEVQWRG QQLMEYQSQH QQQHNQRRRG SERETTTTMT
701: LMDENGEPLT PASAWRAAEK LAKLAMMKKS DLHGFENARF

Arabidopsis Description

WAV3E3 ubiquitin-protein ligase WAV3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.