Factsheet for Bra028357.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003829.1-P
Bra012201.1-P
Bra015965.1-P
Bra016482.1-P
Bra017533.1-P	nucleus
Bra018303.1-P
Bra021652.1-P
Bra022808.1-P
Bra024404.1-P	nucleus
Bra025007.1-P	nucleus
Bra025069.1-P
Bra025158.1-P
Bra026510.1-P
Bra027006.1-P
Bra031852.1-P	nucleus
Bra036240.1-P
Bra036636.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24140.1	Bra012201.1-P	AT1G19980.1	21798944
AT3G24140.1	Bra016482.1-P	AT1G19980.1	21798944
AT3G24140.1	Bra027006.1-P	AT1G62990.1	21798944
AT3G24140.1	Bra036636.1-P	AT1G62990.1	21798944
AT3G24140.1	Bra003829.1-P	AT1G73790.1	21798944
AT3G24140.1	Bra015965.1-P	AT1G73790.1	21798944
AT3G24140.1	Bra018303.1-P	AT2G30590.1	21798944
AT3G24140.1	Bra021652.1-P	AT2G30590.1	21798944
AT3G24140.1	Bra022808.1-P	AT2G30590.1	21798944
AT3G24140.1	Bra025158.1-P	AT3G25710.1	21798944
AT3G24140.1	Bra026510.1-P	AT3G25710.1	21798944
AT3G24140.1	Bra036240.1-P	AT4G02770.1	21798944
AT3G24140.1	Bra025069.1-P	AT5G45600.1	21798944
AT3G24140.1	Bra017533.1-P	AT5G46690.1	17088607
AT3G24140.1	Bra025007.1-P	AT5G46690.1	17088607
AT3G24140.1	Bra017533.1-P	AT5G46690.1	21798944
AT3G24140.1	Bra025007.1-P	AT5G46690.1	21798944
AT3G24140.1	Bra024404.1-P	AT5G65640.1	17088607
AT3G24140.1	Bra031852.1-P	AT5G65640.1	17088607

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92996	Canola	nucleus	91.75	90.62
Bra001929.1-P	Field mustard	nucleus	91.75	90.62
AT3G24140.1	Thale cress	nucleus	89.25	86.23
Bra028351.1-P	Field mustard	nucleus	64.25	71.39
GSMUA_Achr8P28400_001	Banana	nucleus	34.25	68.84
GSMUA_Achr2P06030_001	Banana	nucleus	50.25	63.01
VIT_05s0029g00050.t01	Wine grape	nucleus	61.0	61.46
Solyc05g053660.1.1	Tomato	nucleus	56.0	58.49
PGSC0003DMT400040761	Potato	nucleus	56.25	57.69
KRH75571	Soybean	nucleus	60.75	56.64
KRH71094	Soybean	nucleus	61.0	54.71
Os05t0586300-00	Rice	nucleus	47.0	48.58
TraesCS1D01G289400.1	Wheat	nucleus	48.75	46.54
TraesCS1B01G300100.1	Wheat	nucleus	48.5	46.52
TraesCS1A01G290800.1	Wheat	nucleus	48.25	45.95
Zm00001d009715_P001	Maize	nucleus	47.5	45.45
HORVU1Hr1G071330.3	Barley	nucleus	47.75	43.81
KXG22636	Sorghum	nucleus	48.25	42.23
Bra020775.1-P	Field mustard	nucleus	21.0	41.79
Bra001183.1-P	Field mustard	nucleus	21.25	41.06
Bra040234.1-P	Field mustard	nucleus	20.5	40.8
Bra040856.1-P	Field mustard	nucleus	22.0	40.55
Bra025007.1-P	Field mustard	nucleus	23.25	33.94
Bra016377.1-P	Field mustard	nucleus	24.75	32.78
Bra037414.1-P	Field mustard	nucleus	25.0	32.15
Bra012329.1-P	Field mustard	nucleus	23.75	31.35
Bra029088.1-P	Field mustard	nucleus	26.25	31.25
Bra017533.1-P	Field mustard	nucleus	22.25	30.8
Bra007644.1-P	Field mustard	nucleus	21.25	30.47
Bra016080.1-P	Field mustard	nucleus	24.75	30.46
Bra004505.1-P	Field mustard	nucleus	20.5	30.26
Bra003886.1-P	Field mustard	nucleus	24.25	29.94
Bra027958.1-P	Field mustard	nucleus	21.75	29.79
Bra008017.1-P	Field mustard	nucleus	24.25	29.75
Bra031865.1-P	Field mustard	nucleus	15.75	28.9
Bra022638.1-P	Field mustard	nucleus	25.0	28.57
Bra040483.1-P	Field mustard	nucleus	21.5	27.04
Bra003073.1-P	Field mustard	nucleus	26.5	24.48

Protein Annotations

EnsemblPlants:Bra028357.1	EnsemblPlants:Bra028357.1-P	EnsemblPlantsGene:Bra028357	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR11514	PANTHER:PTHR11514:SF61	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI00025453EE	UniProt:M4EHU2	MapMan:15.5.32	:	:

Description

AT3G24140 (E=2e-161) FMA | FMA (FAMA); DNA binding / transcription activator/ transcription factor

Coordinates

chrA01:-:18240962..18242859

Molecular Weight (calculated)

45286.2 Da

IEP (calculated)

4.828

GRAVY (calculated)

-0.732

Length

400 amino acids

Sequence
(BLAST)

001: MAMDKDYSEP NFLGESSGGK DDTSAGMIDY MFNRNLQQEK QSMPEQHQLS PSRFGETPTF DKMSFADVMQ FADFGPKLAL SQTRNEDDQE TEPGMDPVYF
101: LKFPVLNDKI EDHNQTHHLM SREGGECEGN IGNVFLEEKE NQEDENDNNS VQLRFIGGEE EEDRDNKNVT TKEVKSKRKR ARTSKTSEEV ESQRMTHIAV
201: ERNRRKQMNE HLRVLRSLMP GSYVQRGDQA SIIGGAIEFV RELEQLLQCL ESQKRRRILG ETGNRHLGDM TTTTTTSSPI TSVNNPQIIT GNVTDSEGGG
301: VLREETAENK SCLADVEVKL LGFDAMIKIL SRRRPGQLIK TIAALEDLHL SILHTNITTM EQTVLYSFNV KITSETRFTA EDIASSIQEI FSFIHANTTM

Best Arabidopsis Sequence Match ( AT3G24140.2 )
(BLAST)

001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NM

Arabidopsis Description

FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.