Factsheet for Bra012329.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46652	Canola	nucleus	91.09	97.87
CDY12528	Canola	nucleus	87.79	94.33
Bra040856.1-P	Field mustard	nucleus	61.06	85.25
Bra016377.1-P	Field mustard	nucleus	82.51	82.78
AT1G22490.2	Thale cress	nucleus	72.94	67.79
Bra016080.1-P	Field mustard	nucleus	64.69	60.31
Bra003886.1-P	Field mustard	nucleus	62.71	58.64
Bra008017.1-P	Field mustard	nucleus	62.05	57.67
VIT_18s0001g06650.t01	Wine grape	nucleus	51.49	50.32
Solyc12g087850.1.1	Tomato	nucleus	26.07	48.77
KRH62289	Soybean	nucleus	51.16	47.84
KRH16792	Soybean	nucleus	50.49	47.22
KRH53000	Soybean	nucleus	50.83	46.11
KRH72411	Soybean	nucleus	51.16	44.8
PGSC0003DMT400005446	Potato	nucleus	47.85	42.03
Solyc04g074810.2.1	Tomato	extracellular	47.52	40.56
PGSC0003DMT400045820	Potato	nucleus	38.94	39.86
Bra025007.1-P	Field mustard	nucleus	33.0	36.5
Bra031865.1-P	Field mustard	nucleus	26.07	36.24
Bra027958.1-P	Field mustard	nucleus	34.65	35.96
Bra017533.1-P	Field mustard	nucleus	33.0	34.6
Bra004505.1-P	Field mustard	nucleus	30.36	33.95
Bra007644.1-P	Field mustard	nucleus	29.37	31.9
Bra037414.1-P	Field mustard	nucleus	32.34	31.51
Bra040483.1-P	Field mustard	nucleus	30.36	28.93
Bra001183.1-P	Field mustard	nucleus	18.48	27.05
Bra020775.1-P	Field mustard	nucleus	17.82	26.87
Bra040234.1-P	Field mustard	nucleus	17.49	26.37
Bra028357.1-P	Field mustard	nucleus	31.35	23.75
Bra001929.1-P	Field mustard	nucleus	31.02	23.21
Bra028351.1-P	Field mustard	nucleus	26.73	22.5
Bra029088.1-P	Field mustard	nucleus	24.09	21.73
Bra022638.1-P	Field mustard	nucleus	22.77	19.71
Bra003073.1-P	Field mustard	nucleus	24.75	17.32

Protein Annotations

EnsemblPlants:Bra012329.1	EnsemblPlants:Bra012329.1-P	EnsemblPlantsGene:Bra012329	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR11969	PANTHER:PTHR11969:SF26	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000254148E	UniProt:M4D769	MapMan:15.5.32	:	:

Description

AT1G22490 (E=2e-109) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA07:+:8463246..8465975

Molecular Weight (calculated)

34707.1 Da

IEP (calculated)

6.294

GRAVY (calculated)

-0.627

Length

303 amino acids

Sequence
(BLAST)

001: MPLEAVVNPQ DPVGYLSNCK DFMFHDFYYQ EEIVSQDTKN NIDKLGHEQR FVENDKEEER QWGDHHHHQC PVVPSLEEEL GLPAIDVENP PPVQQRRKKR
101: RTRSNKNKEE IENQRMTHIA VERNRRKQMN EYLAVLRSLM PLSYAQRGDQ ASIVGGAINY VKKLEHILQS MEPRRTTTTS HEADTSTSSL VCTFSDVFTF
201: PQYSKNSLSE VESSSSPAEI EVTVAEGHAN VKIMAKKKPR QLLKLVASIQ SLRLSLLHLN VTTLDNLILY SISVKVEEGS QLNTVEDIAT ALNQIIWRIQ
301: EES

Best Arabidopsis Sequence Match ( AT1G22490.1 )
(BLAST)

001: MPLEAVVYPQ DPFGYLSNCK DFMFHDLYSQ EEFVAQDTKN NIDKLGHEQS FVEQGKEDDH QWRDYHQYPL LIPSLGEELG LTAIDVESHP PPQHRRKRRR
101: TRNCKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM EPKRTRTHDP KGDKTSTSSL VGPFTDFFSF
201: PQYSTKSSSD VPESSSSPAE IEVTVAESHA NIKIMTKKKP RQLLKLITSL QSLRLTLLHL NVTTLHNSIL YSISVRVEEG SQLNTVDDIA TALNQTIRRI
301: QEET

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G22490]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.